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| Describe VeroniqueVoisin/Intranet/Protocol here. | = Protocol = * A to Z protocol to create an EnrichmentMap from gene expression data and using GSEA (Gene Set Enrichment Map) |
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| = Protocol = | == How to create a rank file == == How to create an expression file == == How to run GSEA == == How to create a map == == What is the next step, how to use the map == == How to preprocess the data using R == == How to preprocess the data using Excel == === step1: installation * 1) install R (http://www.r-project.org/) * 2) install RStudio (http://www.rstudio.com/) * 3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/) == How to preprocess the data using Excel == == How to create a rank file == == How to create an expression file == == How to run GSEA == == How to create a map == == What is the next step, how to use the map == |
Protocol
A to Z protocol to create an EnrichmentMap from gene expression data and using GSEA (Gene Set Enrichment Map)
How to create a rank file
How to create an expression file
How to run GSEA
How to create a map
What is the next step, how to use the map
How to preprocess the data using R
How to preprocess the data using Excel
=== step1: installation
1) install R (http://www.r-project.org/)
2) install RStudio (http://www.rstudio.com/)
3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/)
How to preprocess the data using Excel
How to create a rank file
How to create an expression file
How to run GSEA
How to create a map