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| == Installation == == How to preprocess the data using R == * 1) install R : * 2) install RStudio : == How to preprocess the data using Excel == |
* How to create a rank file * How to create an expression file * How to run GSEA * How to create a map * What is the next step, how to use the map * How to preprocess the data using R * How to preprocess the data using Excel === step1: installation === * 1) install R (http://www.r-project.org/) * 2) install RStudio (http://www.rstudio.com/) * 3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/) |
Protocol
A to Z protocol to create an EnrichmentMap from gene expression data and using GSEA (Gene Set Enrichment Map)
- How to create a rank file
- How to create an expression file
- How to run GSEA
- How to create a map
- What is the next step, how to use the map
- How to preprocess the data using R
- How to preprocess the data using Excel
step1: installation
1) install R (http://www.r-project.org/)
2) install RStudio (http://www.rstudio.com/)
3) Go through on online R tutorial (e.g. this one: http://www.cyclismo.org/tutorial/R/)
How to create a rank file
How to create an expression file
How to run GSEA
How to create a map