Peer-reviewed journal
2011
PSICQUIC and PSISCORE: accessing and scoring molecular interactions,
Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, Kerssemakers J, Khadake J, Lynn DJ, Michaut M, O'Kelly G, Ono K, Orchard S, Prieto C, Razick S, Rigina O, Salwinski L, Simonovic M, Velankar S, Winter A, Wu G, Bader GD, Cesareni G, Donaldson IM, Eisenberg D, Kleywegt GJ, Overington J, Ricard-Blum S, Tyers M, Albrecht M, Hermjakob H.;
Nature Methods 2011 Jun 29;8(7):528-9
Pubmed Abstract PDF
Putting genetic interactions into context through a global modular decomposition,
Jeremy Bellay, Gowtham Atluri, Tina L. Sing, Kiana Toufighi, Michael Costanzo, Philippe Souza Moraes Ribeiro, Gaurav Pandey, Joshua Baller, Benjamin VanderSluis, Magali Michaut, Sangjo Han, Philip Kim, Grant W. Brown, Brenda J. Andrews, Charles Boone, Vipin Kumar, Chad L. Myers;
Genome Res. 2011 Aug;21(8):1375-87.
Pubmed Abstract PDF
Protein Complexes are Central in the Yeast Genetic Landscape,
Michaut M., Baryshnikova A., Costanzo M., Myers C.L., Andrews B.J., Boone C., Bader G.D.;
PLoS Computational Biology 7(2): e1001092 Feb 24 2011
February 2011 Issue Cover
Pubmed Abstract PDF
Bringing order to protein disorder through comparative genomics and genetic interactions,
Bellay J*, Han S*, Michaut M*, Kim T, Costanzo M, Andrews BJ, Boone C, Bader GD, Myers CL, Kim PM;
Genome Biology 12(2):R14 Feb 15 2011
Pubmed Abstract PDF
2010
Highlights from the Sixth International Society for Computational Biology (ISCB) Student Council Symposium,
Klijn C., Abeel T. and Michaut M.;
BMC Bioinformatics, 2010, 11(Suppl 10) 7 Dec 2010)
Pubmed Abstract PDF
2009
The IntAct molecular interaction database in 2010,
Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, Michaut M, Montecchi-Palazzi L, Neuhauser SN, Orchard S, Perreau V, Roechert B, van Eijk K, Hermjakob H.; NAR (Oct. 2009).
Pubmed Abstract PDF
Genome wide location analysis reveals a role for Sub1 in RNA polymerase III transcription,
Tavenet A., Suleau A., Dubreuil G., Ferrari R., Ducrot C., Michaut M., Aude J.C., Dieci G., Lefebvre O., Conesa C., Acker J.; PNAS, 106(34):14265-70 (Aug. 2009)
Pubmed Abstract
PNAS PDF
2008
Highlights from the Fourth International Society for Computational Biology (ISCB) Student Council Symposium,
Michaut M., Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.;
BMC Bioinformatics, 2008, 9(Suppl 10):P1 PDF
Genome-wide location analysis reveals a novel role of TFIIS in RNA polymerase III transcription,
Ghavi-Helm Y., Michaut M., Acker J., Aude J.C., Thuriaux P., Werner M. and Soutourina J.; Genes & Development, 22(14):1934-47 (Jul. 2008)
Pubmed Abstract
Genes&Dev PDF
InteroPORC: Automated Inference of Highly Conserved Protein Interaction Networks,
Michaut M., Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; Bioinformatics, 24(14): 1625-1631 (Jul. 2008)
Pubmed Abstract
Bioinformatics PDF
2007
Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator,
Houot L., Floutier M., Marteyn B., Michaut M., Picciocchi A., Legrain P., Aude J.C., Cassier-Chauvat C., Chauvat F.; BMC Genomics, 24(14): 1625-1631 (Oct. 2007)
Pubmed Abstract
BioMed Central PDF
Peer-reviewed conference
2011
Protein Complexes are Central in the Yeast Genetic Landscape,
Michaut M., A.Baryshnikova, M. Costanzo, C. L. Myers, B. Andrews, C. Boone, G. D. Bader; ISMB/ECCB 2011.
Mapping Genetic Interactions in Various Contexts Provides Complementary Information,
Michaut M., G. D. Bader; JOBIM 2011.
2010
Functional and structural disorder: comparative genomics and genetic interactions distinguish functional roles of disorder,
J. Bellay, S. Han, M. Michaut, G. D. Bader, C. L. Myers, P. M. Kim; JOBIM 2010.
Exploring the Monochromatic Landscape in Yeast using Genetic Interactions and Known Processes Reveals the Importance of Protein Complexes,
Michaut M., A.Baryshnikova, M. Costanzo, C. L. Myers, B. Andrews, C. Boone, G. D. Bader; JOBIM 2010.
2008
Inference of Synechocystis protein interaction network,
Michaut M., Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; JOBIM 2008, pages 99-104.
2007
Inference and validation of Synechocystis protein interaction network using orthology,
Michaut M., Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; JOBIM 2007, pages 229-234.
Book chapter
2007
Mining biological data using pyramids,
Polaillon G., Vescovo L., Michaut M., Aude J.C.; in Studies in Classification, Data Analysis, and Knowledge Organization, Springer-Verlag, pages 397-408 (September 2007).
Other
2008
Transcriptomic and proteomic data analysis to study responses to oxidative stress and heavy metals,
Michaut M., PhD thesis, University of Orsay (November 2008)