1947
Comment:
|
1991
|
Deletions are marked like this. | Additions are marked like this. |
Line 27: | Line 27: |
* [[cytoscape_introduction.pptx|Lecture slides]] | * [[attachment:cytoscape_introduction.pptx|Lecture slides]] |
Line 30: | Line 30: |
* [[lab_practical1_data.zip|download data for exercise]] | * [[attachment:lab_practical1_data.zip|download data for exercise]] |
Line 35: | Line 35: |
* [[enrichmentmap_introduction.pptx|Lecture slides]] | * [[attachment:enrichmentmap_introduction.pptx|Lecture slides]] |
Line 38: | Line 38: |
* [[lab_practical2_data.zip|download data for exercise]] | * [[attachment:lab_practical2_data.zip|download data for exercise]] |
Cytoscape Workshop - May 16, 2016
Network visualization and analysis with Cytoscape
Date: Monday, May 16, 2016
Time: 1:30pm-3:30pm
Location: VC 101
How to access the internet
Username: GLBio2016
Password: ccbc2016
Computer set up
Programs to Install:
- A robust internet browser such as Chrome (Internet Explorer is not recommended). Firefox and Safari are also fine.
- Install Java 8 (verify that computer has java 8 installed. )
Install Cytoscape 3.3.0: http://chianti.ucsd.edu/cytoscape-3.3.0/
- Within the Cytoscape program, install the following Cytoscape apps.
From the menu bar, Apps > App manager...
- Within all apps, Search for the following and Install:
EnrichmentMap
WordCloud
ClusterMaker2
AutoAnnotate
Network visualization using Cytoscape: Introduction
Cytoscape lab practical
EnrichmentMap: introduction to the exercise