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== Links == * Git hub with docker image of workshop files can be found at [[https://github.com/BaderLab/Cytoscape-workshop-docker]] * Jupyter instance of above notebooks is hosted at [[http://vps26122.vps.ovh.ca:8888/tree]] |
Cytoscape Workshop - May 16, 2016
Network visualization and analysis with Cytoscape
Date: Monday, May 16, 2016
Time: 1:30pm-3:30pm
Location: VC 101
How to access the internet
Username: GLBio2016
Password: ccbc2016
Computer set up
Programs to Install:
- A robust internet browser such as Chrome (Internet Explorer is not recommended). Firefox and Safari are also fine.
- Install Java 8 (verify that computer has java 8 installed. )
Install Cytoscape 3.3.0: http://chianti.ucsd.edu/cytoscape-3.3.0/
- Within the Cytoscape program, install the following Cytoscape apps.
From the menu bar, Apps > App manager...
- Within all apps, Search for the following and Install:
EnrichmentMap
WordCloud
ClusterMaker2
AutoAnnotate
Network visualization using Cytoscape: Introduction
Cytoscape lab practical
EnrichmentMap: introduction to the exercise
Enrichment map practical
Links
* Git hub with docker image of workshop files can be found at https://github.com/BaderLab/Cytoscape-workshop-docker * Jupyter instance of above notebooks is hosted at http://vps26122.vps.ovh.ca:8888/tree