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| ||<style="text-align: center;">attachment:gary.jpg||[:GaryBader:Gary Bader]||Assistant Professor||Apr.2006|| || | ||<style="text-align: center;">{{attachment:gary.png}}||[[GaryBader|Gary Bader]]||Assistant Professor||Apr.2006|| || ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Post docs||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;"> ||[[IainWallace|Iain Wallace]]||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]]||Oct.2007||Chemical genomics in yeast|| ||<style="text-align: center;">{{attachment:david.jpg}}||[[DavidGfeller|David Gfeller]]|| ||Feb.2008||Specificity and robustness in protein interaction networks|| |
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| ||<style="text-align: center;">attachment:anastasija.jpg||[:AnastasijaBaryshnikova:Anastasija Baryshnikova]||Medical Genetics (co-supervised with [http://www.utoronto.ca/boonelab/ Charlie Boone])||May.2006||Genetic interactions in yeast|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Graduate Rotation Students||||||||<style="background-color: #E0E0FF;"> || ||Pic||Chris Tan||Medical Genetics||Sep.2006||Protein interactions involving SH3 domains|| ||Pic||Graham Cromar||Medical Genetics||Oct.2006||Protein interactions involving SH3 domains|| ||Pic||Trevis Alleyne||Medical Genetics||Nov.2006||Protein interactions involving SH3 domains|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Undergraduate Students||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">attachment:kevin.jpg||[:KevinHa:Kevin Ha]||University of Waterloo Co-op Bioinformatics (co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||Sep.2006||Colorectal Cancer biomarkers|| ||<style="text-align: center;">attachment:vuk.png||[:VukPavlovic:Vuk Pavlovic]||University of Toronto Genetics/Anthropology||Sep.2006||Protein complex detection from networks|| ||Pic||[:IoanaIvan:Ioana Ivan]||University of Toronto Computational Biology (co-supervised with [http://biochemistry.utoronto.ca/reithmeier/bch.html Reinhart Reithmeier])||Sep.2006||Membrane interactions with PDZ domains|| |
||<style="text-align: center;">{{attachment:anastasija.jpg}}||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]]||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]])||May.2006||Genetic interactions in yeast|| ||<style="text-align: center;">{{attachment:Shirley.jpg}}||[[ShirleyHui|Shirley Hui]]||Molecular Genetics||May.2007||Domain specificity|| ||<style="text-align: center;">||[[ShobhitJain|Shobhit Jain]]||Computer Science||Sep.2008||Domain interaction prediction|| ||<style="text-align: center;">{{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]]||[[http://www.sbb.unimi.it/|Università di Milano]] & [[http://bimib.disco.unimib.it/|Università di Milano-Bicocca]], Italy, visiting student||Nov.2007||Active cell map|| ||<style="text-align: center;">{{attachment:vuk.png}}||[[VukPavlovic|Vuk Pavlovic]]||Molecular Genetics||May.2007||Protein complex detection from networks|| ||<style="text-align: center;">{{attachment:chris.jpg}}||[[ChrisTan|Chris Tan]]||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]])||Jan.2007||Network evolution|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Software Engineers||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">{{attachment:moyez.png}}||[[MoyezDharsee|Moyez Dharsee]]||Senior Bioinformatics Research Programmer||Jan.2007||Protein interaction prediction|| ||<style="text-align: center;">{{attachment:Laetitia.jpg}}||[[LaetitiaMorrison|Laetitia Morrison]]||Bioinformatics Research Programmer||Sep.2007||Integrative Biology of Yeast|| ||<style="text-align: center;"> ||[[RuthIsserlin|Ruth Isserlin]]||Bioinformatics Research Programmer (co-supervised with Andrew Emili)||Nov.2007||Active cell map|| |
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| Our lab started in April 2006, we are looking for new members. See ["Jobs"] | ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">[[/Photos|More Photos]]|| |
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| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Software Engineers||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">{{attachment:matan.png}}||Michael Matan||Senior Bioinformatics Research Programmer||Jan-Aug.2007||Integrative Biology of Yeast|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Lab Technicians||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">{{attachment:lianet.jpg}}||Lianet Lopez||Technician (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]])||Oct.2007-Jun.2008||Protein interaction screening|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Undergraduate Students||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">{{attachment:ben.jpg}}||[[BenElliott|Benjamin Elliott]]||University of Toronto Electrical Engineering||May-August.2008||Yeast systems analysis|| ||<style="text-align: center;">{{attachment:ioana.jpg}}||[[IoanaIvan|Ioana Ivan]]||University of Toronto Computational Biology 299Y student (co-supervised with [[http://biochemistry.utoronto.ca/reithmeier/bch.html|Reinhart Reithmeier]])||Sep.2006-Aug.2007||Membrane interactions with PDZ domains|| ||<style="text-align: center;">{{attachment:kevin.jpg}}||[[KevinHa|Kevin Ha]]||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]])||Sep-Dec.2006,<<BR>>Apr-Aug.2007||Colorectal Cancer biomarkers|| ||<style="text-align: center;">{{attachment:stacy.png}}||[[StacyHung|Stacy Hung]]||Bioinformatics, UWaterloo||Apr-Aug.2007||Protein interaction prediction|| ||<style="text-align: center;">{{attachment:natalie.png}}||Natalie Yeung||University of Toronto Immunology, 4th year||Jan-July.2007||Cytoscape usability|| ||<style="text-align: center;">{{attachment:aseel2.png}}||Aseel Al Dallal||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]])||Jan-Apr.2007||Colorectal Cancer biomarkers|| ||<style="text-align: center;">{{attachment:faisal.gif}}||Faisal Naqib||University of Waterloo Faculty of Math(co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]])||May-Aug.2006||Colorectal Cancer biomarkers|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Project Students||||||||<style="background-color: #E0E0FF;"> || ||||Monica Raj||University of British Columbia||July.2007-April.2008||Predicting in vivo PDZ domain protein interactions (4th year research project)|| ||||Maital Ashkenazi||Hebrew University, Jerusalem||Summer 2007||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky)|| ||||Anna Rukosuyeva||University of Toronto, Computer Science||Sep.2007-Dec.2008||Viewing compound nodes in Cytoscape (4th year project course)|| ||||Victoria Mui||University of Toronto, Computer Science||Summer 2008||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson)|| |
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| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Undergraduate Students||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">attachment:faisal.gif||[:FaisalNaqib:Faisal Naqib]||University of Waterloo Faculty of Math(co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||May-Aug.2006||Colorectal Cancer biomarkers|| |
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Graduate Rotation Students||||||<style="background-color: #E0E0FF;"> || ||Adrian Verster||Molecular Genetics||Sept.2008||Predicting trigenic synthetic lethalic in yeast|| ||Harshika Seepany||Medical Genetics||Oct.2007||PDZ protein interaction specificity analysis|| ||Shirley Hui||Medical Genetics||Mar.2007||Gene expression correlation analysis|| ||Vuk Pavlovic||Medical Genetics||Feb.2007||Protein complex detection|| ||Trevis Alleyne||Medical Genetics||Nov.2006||Protein interactions involving SH3 domains - specificity prediction|| ||Graham Cromar||Medical Genetics||Oct.2006||Protein interactions involving SH3 domains - interaction prediction|| ||Chris Tan||Medical Genetics||Sep.2006||Protein interactions involving SH3 domains - specificity analysis|| |
Current Members
Bader Lab |
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Assistant Professor |
Apr.2006 |
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Post docs |
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Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007 |
Chemical genomics in yeast |
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Feb.2008 |
Specificity and robustness in protein interaction networks |
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Graduate Students |
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Molecular Genetics (co-supervised with Charlie Boone) |
May.2006 |
Genetic interactions in yeast |
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Molecular Genetics |
May.2007 |
Domain specificity |
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Computer Science |
Sep.2008 |
Domain interaction prediction |
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Università di Milano & Università di Milano-Bicocca, Italy, visiting student |
Nov.2007 |
Active cell map |
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Molecular Genetics |
May.2007 |
Protein complex detection from networks |
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Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007 |
Network evolution |
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Software Engineers |
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Senior Bioinformatics Research Programmer |
Jan.2007 |
Protein interaction prediction |
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Bioinformatics Research Programmer |
Sep.2007 |
Integrative Biology of Yeast |
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Bioinformatics Research Programmer (co-supervised with Andrew Emili) |
Nov.2007 |
Active cell map |
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![[ATTACH]](/Members?action=AttachFile&do=upload_form&ticket=006909da4f.1e7a641c0997565417a06801822a500c23adb61e&target=chris.jpg "[ATTACH]"){kind=small}
Past Members
Software Engineers |
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Michael Matan |
Senior Bioinformatics Research Programmer |
Jan-Aug.2007 |
Integrative Biology of Yeast |
Lab Technicians |
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Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
Undergraduate Students |
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University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
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University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
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University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
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Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
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Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
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Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
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Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
Project Students |
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Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
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Maital Ashkenazi |
Hebrew University, Jerusalem |
Summer 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
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Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
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Victoria Mui |
University of Toronto, Computer Science |
Summer 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
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Graduate Rotation Students |
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Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |