Diff for "Members" - Bader Lab @ The University of Toronto

Differences between revisions 43 and 63 (spanning 20 versions)

Current Members

Bader Lab
	Gary Bader	Assistant Professor	Apr.2006
Post docs
	Iain Wallace	Co-supervised with Guri Giaever and Corey Nislow	Oct.2007	Chemical genomics in yeast
	David Gfeller		Feb.2008	Specificity and robustness in protein interaction networks
	Oliver Stueker		Dec.2008	Cancer Stem Cells / Active cell map
Graduate Students
	Anastasija Baryshnikova	Molecular Genetics (co-supervised with Charlie Boone)	May.2006	Genetic interactions in yeast
	Shirley Hui	Molecular Genetics	May.2007	Domain specificity
	Shobhit Jain	Computer Science	Sep.2008	Domain interaction prediction
	Daniele Merico	Università di Milano & Università di Milano-Bicocca, Italy, visiting student	Nov.2007	Active cell map
	Vuk Pavlovic	Molecular Genetics	May.2007	Protein complex detection from networks
	Chris Tan	Molecular Genetics (co-supervised with Tony Pawson)	Jan.2007	Network evolution
Software Engineers
	Moyez Dharsee	Senior Bioinformatics Research Programmer	Jan.2007	Protein interaction prediction
	Laetitia Morrison	Bioinformatics Research Programmer	Sep.2007	Integrative Biology of Yeast
	Ruth Isserlin	Bioinformatics Research Programmer (co-supervised with Andrew Emili)	Nov.2007	Active cell map

More Photos

Past Members

Software Engineers
	Michael Matan	Senior Bioinformatics Research Programmer	Jan-Aug.2007	Integrative Biology of Yeast
Lab Technicians
	Lianet Lopez	Technician (co-supervised with Charlie Boone)	Oct.2007-Jun.2008	Protein interaction screening
Undergraduate Students
	Benjamin Elliott	University of Toronto Electrical Engineering	May-August.2008	Yeast systems analysis
	Ioana Ivan	University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier)	Sep.2006-Aug.2007	Membrane interactions with PDZ domains
	Kevin Ha	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Sep-Dec.2006, Apr-Aug.2007	Colorectal Cancer biomarkers
	Stacy Hung	Bioinformatics, UWaterloo	Apr-Aug.2007	Protein interaction prediction
	Natalie Yeung	University of Toronto Immunology, 4th year	Jan-July.2007	Cytoscape usability
	Aseel Al Dallal	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Jan-Apr.2007	Colorectal Cancer biomarkers
	Faisal Naqib	University of Waterloo Faculty of Math(co-supervised with Steve Gallinger)	May-Aug.2006	Colorectal Cancer biomarkers
Project Students
Monica Raj		University of British Columbia	July.2007-April.2008	Predicting in vivo PDZ domain protein interactions (4th year research project)
Maital Ashkenazi		Hebrew University, Jerusalem	Summer 2007	Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky)
Anna Rukosuyeva		University of Toronto, Computer Science	Sep.2007-Dec.2008	Viewing compound nodes in Cytoscape (4th year project course)
Victoria Mui		University of Toronto, Computer Science	Summer 2008	Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson)

Graduate Rotation Students
Adrian Verster	Molecular Genetics	Sept.2008	Predicting trigenic synthetic lethalic in yeast
Harshika Seepany	Medical Genetics	Oct.2007	PDZ protein interaction specificity analysis
Shirley Hui	Medical Genetics	Mar.2007	Gene expression correlation analysis
Vuk Pavlovic	Medical Genetics	Feb.2007	Protein complex detection
Trevis Alleyne	Medical Genetics	Nov.2006	Protein interactions involving SH3 domains - specificity prediction
Graham Cromar	Medical Genetics	Oct.2006	Protein interactions involving SH3 domains - interaction prediction
Chris Tan	Medical Genetics	Sep.2006	Protein interactions involving SH3 domains - specificity analysis

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+||<#e0e0ff style="font-weight: bold; text-align: center;">Bader Lab ||||||||<#e0e0ff style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Assistant Professor ||Apr.2006 || ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Post docs ||||||||<#e0e0ff style="text-align: center;"> ||
||<style="text-align: center;"> ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007 ||Chemical genomics in yeast ||
||<style="text-align: center;"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008 ||Specificity and robustness in protein interaction networks ||
||<style="text-align: center;"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008 ||Cancer Stem Cells / Active cell map ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Graduate Students ||||||||<#e0e0ff style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006 ||Genetic interactions in yeast ||
||<style="text-align: center;"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 ||Domain specificity ||
||<style="text-align: center;"> ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Sep.2008 ||Domain interaction prediction ||
||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||[[http://www.sbb.unimi.it/|Università di Milano]] & [[http://bimib.disco.unimib.it/|Università di Milano-Bicocca]], Italy, visiting student ||Nov.2007 ||Active cell map ||
||<style="text-align: center;"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007 ||Protein complex detection from networks ||
||<style="text-align: center;"> {{attachment:chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007 ||Network evolution ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Software Engineers ||||||||<#e0e0ff style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] ||Senior Bioinformatics Research Programmer ||Jan.2007 ||Protein interaction prediction ||
||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] ||Bioinformatics Research Programmer ||Sep.2007 ||Integrative Biology of Yeast ||
||<style="text-align: center;"> ||[[RuthIsserlin|Ruth Isserlin]] ||Bioinformatics Research Programmer (co-supervised with Andrew Emili) ||Nov.2007 ||Active cell map ||
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-||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bader Lab||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:gary.png||[:GaryBader:Gary Bader]||Assistant Professor||Apr.2006|| ||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Post docs||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;"> ||Iain Wallace||Co-supervised with [http://chemogenomics.med.utoronto.ca/ Guri Giaever and Corey Nislow]||Oct.2007||Chemical genomics in yeast||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Graduate Students||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:anastasija.jpg||[:AnastasijaBaryshnikova:Anastasija Baryshnikova]||Medical Genetics (co-supervised with [http://www.utoronto.ca/boonelab/ Charlie Boone])||May.2006||Genetic interactions in yeast||
||<style="text-align: center;">attachment:Shirley.jpg||[:ShirleyHui:Shirley Hui]||Medical Genetics||May.2007||Domain specificity||
||<style="text-align: center;">attachment:DanieleM.jpg ||Daniele Merico||[http://www.sbb.unimi.it/ Università di Milano] & [http://bimib.disco.unimib.it/ Università di Milano-Bicocca], Italy, visiting student||Nov.2007||Active cell map||
||<style="text-align: center;">attachment:vuk.png||[:VukPavlovic:Vuk Pavlovic]||Medical Genetics||May.2007||Protein complex detection from networks||
||<style="text-align: center;">attachment:chris.jpg||[:ChrisTan:Chris Tan]||Medical Genetics (co-supervised with [http://pawsonlab.mshri.on.ca/ Tony Pawson])||Jan.2007||Network evolution||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Software Engineers||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:moyez.png||[:MoyezDharsee:Moyez Dharsee]||Senior Bioinformatics Research Programmer||Jan.2007||Protein interaction prediction||
||<style="text-align: center;"> ||[:LaetitiaMorrison:Laetitia Morrison]||Bioinformatics Research Programmer||Sep.2007||Integrative Biology of Yeast||
||<style="text-align: center;"> ||[:RuthIsserlin:Ruth Isserlin]||Bioinformatics Research Programmer (co-supervised with Andrew Emili)||Nov.2007||Active cell map||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Lab Technicians||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;"> ||Lianet Lopez||Technician (co-supervised with [http://www.utoronto.ca/boonelab/ Charlie Boone])||Oct.2007||Protein interaction screening||
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-||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">[:/Photos:More Photos]||
+||<#e0e0ff style="font-weight: bold; text-align: center;">[[Members/Photos|More Photos]] ||
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-||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Software Engineers||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:matan.png||Michael Matan||Senior Bioinformatics Research Programmer||Jan-Aug.2007||Integrative Biology of Yeast||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Undergraduate Students||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:ioana.jpg||[:IoanaIvan:Ioana Ivan]||University of Toronto Computational Biology 299Y student (co-supervised with [http://biochemistry.utoronto.ca/reithmeier/bch.html Reinhart Reithmeier])||Sep.2006-Aug.2007||Membrane interactions with PDZ domains||
||<style="text-align: center;">attachment:kevin.jpg||[:KevinHa:Kevin Ha]||University of Waterloo Co-op Bioinformatics (co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||Sep-Dec.2006,[[BR]]Apr-Aug.2007||Colorectal Cancer biomarkers||
||<style="text-align: center;">attachment:stacy.png||[:StacyHung:Stacy Hung]||Bioinformatics, UWaterloo||Apr-Aug.2007||Protein interaction prediction||
||<style="text-align: center;">attachment:natalie.png||Natalie Yeung||University of Toronto Immunology, 4th year||Jan-July.2007||Cytoscape usability||
||<style="text-align: center;">attachment:faisal.gif||Faisal Naqib||University of Waterloo Faculty of Math(co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||May-Aug.2006||Colorectal Cancer biomarkers||
||<style="text-align: center;">attachment:aseel2.png||Aseel Al Dallal||University of Waterloo Co-op Bioinformatics (co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||Jan-Apr.2007||Colorectal Cancer biomarkers||
+||<#e0e0ff style="font-weight: bold; text-align: center;">Software Engineers ||||||||<#e0e0ff style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan ||Senior Bioinformatics Research Programmer ||Jan-Aug.2007 ||Integrative Biology of Yeast ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Lab Technicians ||||||||<#e0e0ff style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:lianet.jpg}} ||Lianet Lopez ||Technician (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||Oct.2007-Jun.2008 ||Protein interaction screening ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Undergraduate Students ||||||||<#e0e0ff style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:ben.jpg}} ||[[BenElliott|Benjamin Elliott]] ||University of Toronto Electrical Engineering ||May-August.2008 ||Yeast systems analysis ||
||<style="text-align: center;"> {{attachment:ioana.jpg}} ||[[IoanaIvan|Ioana Ivan]] ||University of Toronto Computational Biology 299Y student (co-supervised with [[http://biochemistry.utoronto.ca/reithmeier/bch.html|Reinhart Reithmeier]]) ||Sep.2006-Aug.2007 ||Membrane interactions with PDZ domains ||
||<style="text-align: center;"> {{attachment:kevin.jpg}} ||[[KevinHa|Kevin Ha]] ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Sep-Dec.2006,<<BR>>Apr-Aug.2007 ||Colorectal Cancer biomarkers ||
||<style="text-align: center;"> {{attachment:stacy.png}} ||[[StacyHung|Stacy Hung]] ||Bioinformatics, UWaterloo ||Apr-Aug.2007 ||Protein interaction prediction ||
||<style="text-align: center;"> {{attachment:natalie.png}} ||Natalie Yeung ||University of Toronto Immunology, 4th year ||Jan-July.2007 ||Cytoscape usability ||
||<style="text-align: center;"> {{attachment:aseel2.png}} ||Aseel Al Dallal ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Jan-Apr.2007 ||Colorectal Cancer biomarkers ||
||<style="text-align: center;"> {{attachment:faisal.gif}} ||Faisal Naqib ||University of Waterloo Faculty of Math(co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||May-Aug.2006 ||Colorectal Cancer biomarkers ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Project Students ||||||||<#e0e0ff style="text-align: center;"> ||
||||<style="text-align: center;">Monica Raj ||University of British Columbia ||July.2007-April.2008 ||Predicting in vivo PDZ domain protein interactions (4th year research project) ||
||||<style="text-align: center;">Maital Ashkenazi ||Hebrew University, Jerusalem ||Summer 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) ||
||||<style="text-align: center;">Anna Rukosuyeva ||University of Toronto, Computer Science ||Sep.2007-Dec.2008 ||Viewing compound nodes in Cytoscape (4th year project course) ||
||||<style="text-align: center;">Victoria Mui ||University of Toronto, Computer Science ||Summer 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) ||
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-||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Graduate Rotation Students||||||<style="background-color: #E0E0FF;"> ||
||Shirley Hui||Medical Genetics||Mar.2007||Gene expression correlation analysis||
||Vuk Pavlovic||Medical Genetics||Feb.2007||Protein complex detection||
||Trevis Alleyne||Medical Genetics||Nov.2006||Protein interactions involving SH3 domains - specificity prediction||
||Graham Cromar||Medical Genetics||Oct.2006||Protein interactions involving SH3 domains - interaction prediction||
||Chris Tan||Medical Genetics||Sep.2006||Protein interactions involving SH3 domains - specificity analysis||
+||<#e0e0ff style="font-weight: bold; text-align: center;">Graduate Rotation Students ||||||<#e0e0ff style="text-align: center;"> ||
||Adrian Verster ||Molecular Genetics ||Sept.2008 ||Predicting trigenic synthetic lethalic in yeast ||
||Harshika Seepany ||Medical Genetics ||Oct.2007 ||PDZ protein interaction specificity analysis ||
||Shirley Hui ||Medical Genetics ||Mar.2007 ||Gene expression correlation analysis ||
||Vuk Pavlovic ||Medical Genetics ||Feb.2007 ||Protein complex detection ||
||Trevis Alleyne ||Medical Genetics ||Nov.2006 ||Protein interactions involving SH3 domains - specificity prediction ||
||Graham Cromar ||Medical Genetics ||Oct.2006 ||Protein interactions involving SH3 domains - interaction prediction ||
||Chris Tan ||Medical Genetics ||Sep.2006 ||Protein interactions involving SH3 domains - specificity analysis ||