Ruth Isserlin

Email: <ruth DOT isserlin AT utoronto DOT ca>

Weekly Updates

Current Projects:

1. Automatically updated Gene sets

2. Enrichment Map

3. Modularizing and Porting EM to Cytoscape 3.0 and integrating it with GSEA

4. Google summer of code 2014 Co-Authorship Social Network App for Cytoscape 3.0 Idea

Current Analyses:

1. LA03/LA02 - defining ligand/receptor networks

Old Projects:

1. MouseHeartPathwayProject

   • Mouse Phosphoprotein Analysis

2. Pathway Analysis Track

3. GeneSets (old)

4. Micro RNA Analysis Track

5. Medical Decision Making Project

6. Human Chromatin Project

7. modified psicquic cytoscape plugin to compute pairwise interactions

8. Google summer of code 2013 Copublication App for Cytoscape 3.0 Idea

9. What do we publish? - publication trends analyzed querying different sets of genes.

Fun:

1. EdibleEnrichmentMaps

Data:

• Data/BINDTranslation

• Data/R9cEM

• Data/RoadsNotTaken

• Data/ProteomicsEM

Misc:

• HumanChromatinProjectGroup

• InstallingCytoscape32OnMacOSXSnowLeopard

• CytoscapeWorkshopMay2016