Cytoscape Workshop - May 16, 2016
Network visualization and analysis with Cytoscape
Date: Monday, May 16, 2016
Location: VC 101
How to access the internet
Computer set up
Programs to Install:
- A robust internet browser such as Chrome (Internet Explorer is not recommended). Firefox and Safari are also fine.
- Install Java 8 (verify that computer has java 8 installed. )
Install Cytoscape 3.3.0: http://chianti.ucsd.edu/cytoscape-3.3.0/
- Within the Cytoscape program, install the following Cytoscape apps.
From the menu bar, Apps > App manager...
- Within all apps, Search for the following and Install:
Network visualization using Cytoscape: Introduction
Cytoscape lab practical
EnrichmentMap: introduction to the exercise
Enrichment map practical
Git hub with docker image of workshop files can be found at https://github.com/BaderLab/Cytoscape-workshop-docker
Jupyter instance of above notebooks is hosted at http://vps26122.vps.ovh.ca:8888/tree