Diff for "Members" - Bader Lab @ The University of Toronto

Differences between revisions 10 and 83 (spanning 73 versions)

Current Members

Bader Lab
	Gary Bader	Assistant Professor	Apr.2006
Post docs
	Iain Wallace	Co-supervised with Guri Giaever and Corey Nislow	Oct.2007	Chemical genomics in yeast
	David Gfeller		Feb.2008	Specificity and robustness in protein interaction networks
	Oliver Stueker		Dec.2008	Cancer Stem Cells / Active cell map
	Magali Michaut		Jan.2009	Multiple perturbations in yeast
	Daniele Merico		Jan.2009 (formerly visiting student since Nov.2007)	Active cell map
Graduate Students
	Ron Ammar	Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab	Jan.2009	Yeast chemical genomics & Drug target identification
	Anastasija Baryshnikova	Molecular Genetics (co-supervised with Charlie Boone)	May.2006	Genetic interactions in yeast
	Shirley Hui	Molecular Genetics	May.2007	Domain specificity
	Shobhit Jain	Computer Science	Sep.2008	Domain interaction prediction
	Vuk Pavlovic	Molecular Genetics	May.2007	Protein complex detection from networks
	Chris Tan	Molecular Genetics (co-supervised with Tony Pawson)	Jan.2007	Network evolution
	Xiaojian Shao	China Agricultural University, China, Visiting student	Sept.2008	Quantitative interaction prediction
Undergraduate Students
	Max Franz	University of Waterloo	Sept to Dec.2009 (co-op)	GeneMANIA
	George Wright	McMaster University Biology and Pharmacology co-op student	May to Aug.2009	GeneMANIA
Software Engineers
	Moyez Dharsee	Jan.2007	Protein interaction prediction
	Laetitia Morrison	Sep.2007	Integrative Biology of Yeast
	Ruth Isserlin	Nov.2007	Active cell map (Co-supervised with Andrew Emili)
	Ovi Comes	May.2008	GeneMANIA
	Khalid Zhuberi	Jun.2008	GeneMANIA
	Rashad Badrawi	Aug.2008	GeneMANIA/Pathway Commons
	Christian Lopes	Sep.2008	GeneMANIA
	Jason Montojo	Sep.2008	GeneMANIA
	Igor Rodchenkov	Nov.2008	Pathway Commons
Project Manager
	Sylva Donaldson	Project Manager, Coordinator of Training and Outreach	Jun.2008	GeneMANIA
Quality Assurance
	Farzana Kazi	QA Analyst	Jan.2009	GeneMANIA/Cytoscape/Pathway Commons
Sys Admin/Build Process
	Harold Rodriguez	Systems Administrator & Build Process	Feb.2009	GeneMANIA

More Photos

Past Members

Software Engineers
	Michael Matan	Senior Bioinformatics Research Programmer	Jan-Aug.2007	Integrative Biology of Yeast
Lab Technicians
	Lianet Lopez	Technician (co-supervised with Charlie Boone)	Oct.2007-Jun.2008	Protein interaction screening
Undergraduate Students
	Anson Maitland	University of Waterloo Mathematics co-op student	May to Aug.2009	GeneMANIA
	Quentin Shao	McMaster University Applied Mathematics co-op student	May to Aug.2009	GeneMANIA
	Michael Tsui	University of Toronto Bioinformatics	May to Aug.2009	GeneMANIA
	Pauline Chao	University of Waterloo	Jan-May.2009	GeneMANIA
	Benjamin Elliott	University of Toronto Electrical Engineering	May-August.2008	Yeast systems analysis
	Ioana Ivan	University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier)	Sep.2006-Aug.2007	Membrane interactions with PDZ domains
	Kevin Ha	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Sep-Dec.2006, Apr-Aug.2007	Colorectal Cancer biomarkers
	Stacy Hung	Bioinformatics, UWaterloo	Apr-Aug.2007	Protein interaction prediction
	Natalie Yeung	University of Toronto Immunology, 4th year	Jan-July.2007	Cytoscape usability
	Aseel Al Dallal	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Jan-Apr.2007	Colorectal Cancer biomarkers
	Faisal Naqib	University of Waterloo Faculty of Math(co-supervised with Steve Gallinger)	May-Aug.2006	Colorectal Cancer biomarkers
Project Students
Monica Raj		University of British Columbia	July.2007-April.2008	Predicting in vivo PDZ domain protein interactions (4th year research project)
Maital Ashkenazi		Hebrew University, Jerusalem	Summer 2007	Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky)
Anna Rukosuyeva		University of Toronto, Computer Science	Sep.2007-Dec.2008	Viewing compound nodes in Cytoscape (4th year project course)
Victoria Mui		University of Toronto, Computer Science	Summer 2008	Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson)

Graduate Rotation Students
Brad Arshinoff	Molecular Genetics	Jan.2009	Analyzing yeast high content screening data
Devon Radford	Molecular Genetics	Nov.2008	Predicting genetic interactions in yeast from mutations in cell structure
Ron Ammar	Molecular Genetics	Oct.2008	Predicting active biomolecules in yeast
Adrian Verster	Molecular Genetics	Sept.2008	Predicting trigenic synthetic lethalic in yeast
Harshika Seepany	Medical Genetics	Oct.2007	PDZ protein interaction specificity analysis
Shirley Hui	Medical Genetics	Mar.2007	Gene expression correlation analysis
Vuk Pavlovic	Medical Genetics	Feb.2007	Protein complex detection
Trevis Alleyne	Medical Genetics	Nov.2006	Protein interactions involving SH3 domains - specificity prediction
Graham Cromar	Medical Genetics	Oct.2006	Protein interactions involving SH3 domains - interaction prediction
Chris Tan	Medical Genetics	Sep.2006	Protein interactions involving SH3 domains - specificity analysis

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+||<class="table-header">Bader Lab ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Assistant Professor ||Apr.2006 || ||
||<class="table-header">Post docs ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007 ||Chemical genomics in yeast ||
||<style="text-align: center;"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008 ||Specificity and robustness in protein interaction networks ||
||<style="text-align: center;"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008 ||Cancer Stem Cells / Active cell map ||
||<style="text-align: center;"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009 ||Multiple perturbations in yeast ||
||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] || ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map ||
||<class="table-header">Graduate Students ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Ron - Moose - 2.JPG}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]] ||Jan.2009 ||Yeast chemical genomics & Drug target identification ||
||<style="text-align: center;"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006 ||Genetic interactions in yeast ||
||<style="text-align: center;"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 ||Domain specificity ||
||<style="text-align: center;"> {{attachment:shobhit.png}} ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Sep.2008 ||Domain interaction prediction ||
||<style="text-align: center;"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007 ||Protein complex detection from networks ||
||<style="text-align: center;"> {{attachment:chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007 ||Network evolution ||
||<style="text-align: center;"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008 ||Quantitative interaction prediction ||
||<class="table-header">Undergraduate Students ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||University of Waterloo ||Sept to Dec.2009 (co-op) ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<class="table-header">Software Engineers ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] ||Jan.2007 ||||<style="text-align: center;">Protein interaction prediction ||
||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] ||Sep.2007 ||||<style="text-align: center;">Integrative Biology of Yeast ||
||<style="text-align: center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center;">Active cell map (Co-supervised with Andrew Emili) ||
||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] ||May.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] ||Aug.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
||<style="text-align: center;"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center;">[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
||<class="table-header">Project Manager ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008 ||[[http://beta.genemania.org|GeneMANIA]] ||
||<class="table-header">Quality Assurance ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009 ||[[http://beta.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
||<class="table-header">Sys Admin/Build Process ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]] & [[http://baderlab.org/Genemania/BuildProcess|Build Process]] ||Feb.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
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-||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bader Lab||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:gary.jpg||[:GaryBader:Gary Bader]||Assistant Professor||Apr.2006|| ||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Graduate Students||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:anastasija.jpg||[:AnastasijaBaryshnikova:Anastasija Baryshnikova]||Medical Genetics (co-supervised with [http://www.utoronto.ca/boonelab/ Charlie Boone])||May.2006||Genetic interactions in yeast||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Graduate Rotation Students||||||||<style="background-color: #E0E0FF;"> ||
||Pic||Chris Tan||Medical Genetics||Sep.2006|| ||
||Pic||Graham Cromar||Medical Genetics||Sep.2006|| ||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Undergraduate Students||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:kevin.jpg||[:KevinHa:Kevin Ha]||University of Waterloo Co-op Bioinformatics (co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||Sep.2006||Colorectal Cancer biomarkers||
||Pic||[:VukPavlovic:Vuk Pavlovic]||University of Toronto Genetics/Anthropology||Sep.2006|| ||
||Pic||[:IoanaIvan:Ioana Ivan]||University of Toronto Computational Biology (co-supervised with [http://biochemistry.utoronto.ca/reithmeier/bch.html Reinhart Reithmeier])||Sep.2006||Membrane interactions with PDZ domains||
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-Our lab started in April 2006, we are looking for new members. See ["Jobs"]
+||<class="table-header">[[Members/Photos|More Photos]] ||
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+||<class="table-header">Software Engineers ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan ||Senior Bioinformatics Research Programmer ||Jan-Aug.2007 ||Integrative Biology of Yeast ||
||<class="table-header">Lab Technicians ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:lianet.jpg}} ||Lianet Lopez ||Technician (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||Oct.2007-Jun.2008 ||Protein interaction screening ||
||<class="table-header">Undergraduate Students ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Anson.jpg}} ||[[AnsonMaitland|Anson Maitland]] ||University of Waterloo Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Quentin.jpg}} ||[[QuentinShao|Quentin Shao]] ||McMaster University Applied Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics  ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Pauline.jpg}} ||[[PaulineChao|Pauline Chao]] ||University of Waterloo ||Jan-May.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:ben.jpg}} ||[[BenElliott|Benjamin Elliott]] ||University of Toronto Electrical Engineering ||May-August.2008 ||Yeast systems analysis ||
||<style="text-align: center;"> {{attachment:ioana.jpg}} ||[[IoanaIvan|Ioana Ivan]] ||University of Toronto Computational Biology 299Y student (co-supervised with [[http://biochemistry.utoronto.ca/reithmeier/bch.html|Reinhart Reithmeier]]) ||Sep.2006-Aug.2007 ||Membrane interactions with PDZ domains ||
||<style="text-align: center;"> {{attachment:kevin.jpg}} ||[[KevinHa|Kevin Ha]] ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Sep-Dec.2006,<<BR>>Apr-Aug.2007 ||Colorectal Cancer biomarkers ||
||<style="text-align: center;"> {{attachment:stacy.png}} ||[[StacyHung|Stacy Hung]] ||Bioinformatics, UWaterloo ||Apr-Aug.2007 ||Protein interaction prediction ||
||<style="text-align: center;"> {{attachment:natalie.png}} ||Natalie Yeung ||University of Toronto Immunology, 4th year ||Jan-July.2007 ||Cytoscape usability ||
||<style="text-align: center;"> {{attachment:aseel2.png}} ||Aseel Al Dallal ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Jan-Apr.2007 ||Colorectal Cancer biomarkers ||
||<style="text-align: center;"> {{attachment:faisal.gif}} ||Faisal Naqib ||University of Waterloo Faculty of Math(co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||May-Aug.2006 ||Colorectal Cancer biomarkers ||
||<class="table-header">Project Students ||||||||<class="table-header"> ||
||||<style="text-align: center;">Monica Raj ||University of British Columbia ||July.2007-April.2008 ||Predicting in vivo PDZ domain protein interactions (4th year research project) ||
||||<style="text-align: center;">Maital Ashkenazi ||Hebrew University, Jerusalem ||Summer 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) ||
||||<style="text-align: center;">Anna Rukosuyeva ||University of Toronto, Computer Science ||Sep.2007-Dec.2008 ||Viewing compound nodes in Cytoscape (4th year project course) ||
||||<style="text-align: center;">Victoria Mui ||University of Toronto, Computer Science ||Summer 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) ||
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-||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Undergraduate Students||||||||<style="background-color: #E0E0FF;"> ||
||<style="text-align: center;">attachment:faisal.gif||[:FaisalNaqib:Faisal Naqib]||University of Waterloo Faculty of Math(co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||May-Aug.2006||Colorectal Cancer biomarkers||
+||<class="table-header">Graduate Rotation Students ||||||<class="table-header"> ||
||Brad Arshinoff ||Molecular Genetics ||Jan.2009 ||Analyzing yeast high content screening data ||
||Devon Radford ||Molecular Genetics ||Nov.2008 ||Predicting genetic interactions in yeast from mutations in cell structure ||
||Ron Ammar ||Molecular Genetics ||Oct.2008 ||Predicting active biomolecules in yeast ||
||Adrian Verster ||Molecular Genetics ||Sept.2008 ||Predicting trigenic synthetic lethalic in yeast ||
||Harshika Seepany ||Medical Genetics ||Oct.2007 ||PDZ protein interaction specificity analysis ||
||Shirley Hui ||Medical Genetics ||Mar.2007 ||Gene expression correlation analysis ||
||Vuk Pavlovic ||Medical Genetics ||Feb.2007 ||Protein complex detection ||
||Trevis Alleyne ||Medical Genetics ||Nov.2006 ||Protein interactions involving SH3 domains - specificity prediction ||
||Graham Cromar ||Medical Genetics ||Oct.2006 ||Protein interactions involving SH3 domains - interaction prediction ||
||Chris Tan ||Medical Genetics ||Sep.2006 ||Protein interactions involving SH3 domains - specificity analysis ||