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||<class="table-header">Bader Lab ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Assistant Professor ||Apr.2006 || || ||<class="table-header">Post docs ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007 ||Chemical genomics in yeast || ||<style="text-align: center"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009 ||Multiple perturbations in yeast || ||<style="text-align: center"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map || ||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Ron - Moose - 2.JPG|Ron - Moose - 2.JPG}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]]) ||Jan.2009 ||Yeast chemical genomics & Drug target identification || ||<style="text-align: center"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006 ||Genetic interactions in yeast || ||<style="text-align: center"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 ||Domain specificity || ||<style="text-align: center"> {{attachment:shobhit.png}} ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Sep.2008 ||Domain interaction prediction || ||<style="text-align: center"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007 ||Protein complex detection from networks || ||<style="text-align: center"> {{attachment:chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007 ||Network evolution || ||<style="text-align: center"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008 ||Quantitative interaction prediction || ||<style="text-align: center"> {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]] ||Computer Science ||Sept.2010 ||Network alignment || ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:xx.jpg}}||[[XiangXing|Xiang Xing]] ||University of Toronto ||May 2010 ||WW domain prediction, PDZ domain prediction|| ||<style="text-align: center"> ||Adrian Zhu || || Jan. 2011 ||||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]] || ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center">Active cell map <<BR>>(Co-supervised with Andrew Emili) || ||<style="text-align: center"> {{attachment:khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center">[[http://www.pathwaycommons.org|Pathway Commons]]<<BR>>[[http://www.biopax.org|BioPAX]] [[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align: center"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]] & [[http://baderlab.org/Genemania/BuildProcess|Build Process]] ||Feb.2009 ||[[http://www.genemania.org/|GeneMANIA]] || ||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Jun.jpg}} ||Jun Gu ||Technician (co-supervised with [[http://www.thedonnellycentre.utoronto.ca/members/sachdev_sidhu.html|Dev Sidhu]]) ||Dec.2010 ||Protein interaction screening || ||<class="table-header">Research Associate ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> ||[[VeroniqueVoisin|Veronique Voisin]] ||Research Associate ||Jan.2011 ||Pathway Analysis of Cancer Stem Cells || |
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||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bader Lab||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">attachment:gary.jpg||[:GaryBader:Gary Bader]||Assistant Professor||Apr.2006|| || ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Graduate Students||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">attachment:anastasija.jpg||[:AnastasijaBaryshnikova:Anastasija Baryshnikova]||Medical Genetics (co-supervised with [http://www.utoronto.ca/boonelab/ Charlie Boone])||May.2006||Genetic interactions in yeast|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Graduate Rotation Students||||||||<style="background-color: #E0E0FF;"> || ||Pic||Chris Tan||Medical Genetics||Sep.2006|| || ||Pic||Graham Cromar||Medical Genetics||Sep.2006|| || ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Undergraduate Students||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">attachment:kevin.jpg||[:KevinHa:Kevin Ha]||University of Waterloo Co-op Bioinformatics (co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||Sep.2006||Colorectal Cancer biomarkers|| ||<style="text-align: center;">attachment:vuk.png||[:VukPavlovic:Vuk Pavlovic]||University of Toronto Genetics/Anthropology||Sep.2006|| || ||Pic||[:IoanaIvan:Ioana Ivan]||University of Toronto Computational Biology (co-supervised with [http://biochemistry.utoronto.ca/reithmeier/bch.html Reinhart Reithmeier])||Sep.2006||Membrane interactions with PDZ domains|| |
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Our lab started in April 2006, we are looking for new members. See ["Jobs"] | ||<class="table-header">[[Members/Photos|More Photos]] || |
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||<class="table-header">Post Docs ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008-Apr.2010 ||Cancer Stem Cells / Active cell map || ||<style="text-align: center"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008-Feb.2010 ||Specificity and robustness in protein interaction networks || ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] || ||May.2008-Jun.2010 ||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] || ||Aug.2008-Apr.2010 ||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<style="text-align: center"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] || ||Sep.2007-Dec.2009 ||<style="text-align: center">Integrative Biology of Yeast || ||<style="text-align: center"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] || ||Jan.2007-Oct.2008 ||<style="text-align: center">Protein interaction prediction || ||<style="text-align: center"> {{attachment:matan.png}} ||Michael Matan || ||Jan-Aug.2007 ||<style="text-align: center">Integrative Biology of Yeast || ||<class="table-header">Project Manager ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]] || ||<class="table-header">Quality Assurance ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:lianet.jpg}} ||Lianet Lopez ||Technician (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||Oct.2007-Jun.2008 ||Protein interaction screening || ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Ameen.png}} ||[[AmeenModhafar|Ameen Modhafar]] ||University of Waterloo Systems Design Engineering co-op student ||Jan to Apr.2010 ||Yeast systems analysis || ||<style="text-align: center"> {{attachment:Anson.jpg}} ||[[AnsonMaitland|Anson Maitland]] ||University of Waterloo Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Quentin.jpg}} ||[[QuentinShao|Quentin Shao]] ||McMaster University Applied Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Pauline.jpg}} ||[[PaulineChao|Pauline Chao]] ||University of Waterloo ||Jan-May.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:ben.jpg}} ||[[BenElliott|Benjamin Elliott]] ||University of Toronto Electrical Engineering ||May-August.2008 ||Yeast systems analysis || ||<style="text-align: center"> {{attachment:ioana.jpg}} ||[[IoanaIvan|Ioana Ivan]] ||University of Toronto Computational Biology 299Y student (co-supervised with [[http://biochemistry.utoronto.ca/reithmeier/bch.html|Reinhart Reithmeier]]) ||Sep.2006-Aug.2007 ||Membrane interactions with PDZ domains || ||<style="text-align: center"> {{attachment:kevin.jpg}} ||[[KevinHa|Kevin Ha]] ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Sep-Dec.2006,<<BR>>Apr-Aug.2007 ||Colorectal Cancer biomarkers || ||<style="text-align: center"> {{attachment:stacy.png}} ||[[StacyHung|Stacy Hung]] ||Bioinformatics, UWaterloo ||Apr-Aug.2007 ||Protein interaction prediction || ||<style="text-align: center"> {{attachment:natalie.png}} ||Natalie Yeung ||University of Toronto Immunology, 4th year ||Jan-July.2007 ||Cytoscape usability || ||<style="text-align: center"> {{attachment:aseel2.png}} ||Aseel Al Dallal ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Jan-Apr.2007 ||Colorectal Cancer biomarkers || ||<style="text-align: center"> {{attachment:faisal.gif}} ||Faisal Naqib ||University of Waterloo Faculty of Math(co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||May-Aug.2006 ||Colorectal Cancer biomarkers || ||<class="table-header">Project Students ||||||||<class="table-header" style="text-align: center"> || ||||<style="text-align: center">Layla Oesper ||University of Wisconsin, Madison, WI ||May-Aug 2010 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) || ||||<style="text-align: center">Monica Raj ||University of British Columbia ||July.2007-April.2008 ||Predicting in vivo PDZ domain protein interactions (4th year research project) || ||||<style="text-align: center">Maital Ashkenazi ||Hebrew University, Jerusalem ||May-Aug 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) || ||||<style="text-align: center">Anna Rukosuyeva ||University of Toronto, Computer Science ||Sep.2007-Dec.2008 ||Viewing compound nodes in Cytoscape (4th year project course) || ||||<style="text-align: center">Victoria Mui ||University of Toronto, Computer Science ||May-Aug 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) || |
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||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Undergraduate Students||||||||<style="background-color: #E0E0FF;"> || ||<style="text-align: center;">attachment:faisal.gif||[:FaisalNaqib:Faisal Naqib]||University of Waterloo Faculty of Math(co-supervised with [http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html Steve Gallinger])||May-Aug.2006||Colorectal Cancer biomarkers|| |
||<class="table-header">Graduate Rotation Students ||||||<class="table-header" style="text-align: center"> || ||Akiko Sekikawa ||Molecular Genetics ||Sep.2010 ||Protein interaction network evolution || ||Carl Song ||Molecular Genetics ||Dec.2009 ||Pathway analysis || ||Gavin Wilson ||Molecular Genetics ||Sep.2009 ||Protein interaction network evolution || ||Brad Arshinoff ||Molecular Genetics ||Jan.2009 ||Analyzing yeast high content screening data || ||Devon Radford ||Molecular Genetics ||Nov.2008 ||Predicting genetic interactions in yeast from mutations in cell structure || ||Ron Ammar ||Molecular Genetics ||Oct.2008 ||Predicting active biomolecules in yeast || ||Adrian Verster ||Molecular Genetics ||Sept.2008 ||Predicting trigenic synthetic lethalic in yeast || ||Harshika Seepany ||Medical Genetics ||Oct.2007 ||PDZ protein interaction specificity analysis || ||Shirley Hui ||Medical Genetics ||Mar.2007 ||Gene expression correlation analysis || ||Vuk Pavlovic ||Medical Genetics ||Feb.2007 ||Protein complex detection || ||Trevis Alleyne ||Medical Genetics ||Nov.2006 ||Protein interactions involving SH3 domains - specificity prediction || ||Graham Cromar ||Medical Genetics ||Oct.2006 ||Protein interactions involving SH3 domains - interaction prediction || ||Chris Tan ||Medical Genetics ||Sep.2006 ||Protein interactions involving SH3 domains - specificity analysis || |
Current Members
Bader Lab |
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Assistant Professor |
Apr.2006 |
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Post docs |
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Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007 |
Chemical genomics in yeast |
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Jan.2009 |
Multiple perturbations in yeast |
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Co-supervised with Andrew Emili |
Jan.2009 (formerly visiting student since Nov.2007) |
Active cell map |
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Graduate Students |
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Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab) |
Jan.2009 |
Yeast chemical genomics & Drug target identification |
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Molecular Genetics (co-supervised with Charlie Boone) |
May.2006 |
Genetic interactions in yeast |
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Molecular Genetics |
May.2007 |
Domain specificity |
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Computer Science |
Sep.2008 |
Domain interaction prediction |
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Molecular Genetics |
May.2007 |
Protein complex detection from networks |
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Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007 |
Network evolution |
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China Agricultural University, China, Visiting student |
Sept.2008 |
Quantitative interaction prediction |
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Computer Science |
Sept.2010 |
Network alignment |
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Undergraduate Students |
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University of Toronto |
May 2010 |
WW domain prediction, PDZ domain prediction |
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Adrian Zhu |
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Jan. 2011 |
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Software Engineers |
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Nov.2007 |
Active cell map |
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Jun.2008 |
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Sep.2008 |
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Sep.2008 |
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May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) |
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Nov.2008 |
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Feb.2009 |
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Lab Technicians |
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Jun Gu |
Technician (co-supervised with Dev Sidhu) |
Dec.2010 |
Protein interaction screening |
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Research Associate |
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Research Associate |
Jan.2011 |
Pathway Analysis of Cancer Stem Cells |
Past Members
Post Docs |
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Dec.2008-Apr.2010 |
Cancer Stem Cells / Active cell map |
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Feb.2008-Feb.2010 |
Specificity and robustness in protein interaction networks |
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Software Engineers |
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May.2008-Jun.2010 |
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Aug.2008-Apr.2010 |
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Sep.2007-Dec.2009 |
Integrative Biology of Yeast |
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Jan.2007-Oct.2008 |
Protein interaction prediction |
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Michael Matan |
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Jan-Aug.2007 |
Integrative Biology of Yeast |
Project Manager |
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Project Manager, Coordinator of Training and Outreach |
Jun.2008-Jun.2010 |
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Quality Assurance |
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|||
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QA Analyst |
Jan.2009-Jun.2010 |
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Lab Technicians |
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Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
Undergraduate Students |
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|||
|
University of Waterloo Systems Design Engineering co-op student |
Jan to Apr.2010 |
Yeast systems analysis |
|
|
University of Waterloo Mathematics co-op student |
May to Aug.2009 |
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McMaster University Applied Mathematics co-op student |
May to Aug.2009 |
||
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University of Toronto Bioinformatics |
May to Aug.2009 |
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McMaster University Biology and Pharmacology co-op student |
May to Aug.2009 |
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University of Waterloo |
Jan-May.2009 |
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University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
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University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
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University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
|
|
Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
|
|
Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
|
Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
|
Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
Project Students |
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|||
Layla Oesper |
University of Wisconsin, Madison, WI |
May-Aug 2010 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
|
Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
|
Maital Ashkenazi |
Hebrew University, Jerusalem |
May-Aug 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
|
Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
|
Victoria Mui |
University of Toronto, Computer Science |
May-Aug 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
Graduate Rotation Students |
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||
Akiko Sekikawa |
Molecular Genetics |
Sep.2010 |
Protein interaction network evolution |
Carl Song |
Molecular Genetics |
Dec.2009 |
Pathway analysis |
Gavin Wilson |
Molecular Genetics |
Sep.2009 |
Protein interaction network evolution |
Brad Arshinoff |
Molecular Genetics |
Jan.2009 |
Analyzing yeast high content screening data |
Devon Radford |
Molecular Genetics |
Nov.2008 |
Predicting genetic interactions in yeast from mutations in cell structure |
Ron Ammar |
Molecular Genetics |
Oct.2008 |
Predicting active biomolecules in yeast |
Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |