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| ||<style="text-align:center"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Assistant Professor ||Apr.2006 || || | ||<style="text-align:center"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Associate Professor ||Apr.2006 || || |
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| ||<style="text-align:center"> {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] || || Jan.2011 || Cancer genomics || | ||<style="text-align:center"> {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] || ||Jan.2011 ||Cancer genomics || ||<style="text-align:center"> {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || ||Aug.2011 ||Cancer genomics || |
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| ||<style="text-align:center"> {{attachment:Chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007 ||Network evolution || | |
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| ||<style="text-align:center"> {{attachment:MohammedAlshalalfa.jpg}} ||[[Mohammed Alshalalfa]] ||Visiting student from University of Calgary ||May.2011-Dec 2011 ||Master regulators identification using network biology || ||<style="text-align:center"> {{attachment:sambourg.png}} ||[[LaureSambourg|Laure Sambourg]] ||[[http://www-timc.imag.fr/?lang=en|Laboratoire TIMC-IMAG]], France, Visiting student ||June.2011-Dec.2011 ||Cancer interactome and alternative splicing || ||<style="text-align:center;"> {{attachment:davids_tn.jpg}} ||[[DavidShih|David Shih]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Jan.2011 ||Cancer genomics of medulloblastoma || ||<style="text-align:center"> {{attachment:olhovsky.jpg}} ||[[http://baderlab.org/MarinaOlhovsky|Marina Olhovsky]] ||Part-time M. Sc. student (co-supervised by [[http://www.yorku.ca/ronp/|Ron Pearlman]]); software engineer at [[http://pawsonlab.mshri.on.ca|Tony Pawson]]'s laboratory ||Jan. 2012 ||Computational predictions of protein-protein interactions || |
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| ||<style="text-align:center"> ||[[VeroniqueVoisin|Veronique Voisin]] ||Research Associate ||Jan.2011 ||Pathway Analysis of Cancer Stem Cells || | ||<style="text-align:center"> {{attachment:Veronique.png}} ||[[VeroniqueVoisin|Veronique Voisin]] ||Research Associate ||Jan.2011 ||Pathway Analysis of Cancer Stem Cells || |
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| ||<style="text-align:center"> {{attachment:Chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007-Aug.2011 ||Network evolution || | |
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| ||<style="text-align:center"> {{attachment:adrian.jpg}}||Adrian Zhu || ||Jan. 2011 ||||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]] || | ||<style="text-align:center"> {{attachment:adrian.jpg}} ||Adrian Zhu || ||Jan. 2011 ||||<style="text-align:center">[[http://www.genemania.org/|GeneMANIA]] || |
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| ||||<style="text-align:center">Layla Oesper ||University of Wisconsin, Madison, WI ||May-Aug 2010 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) || | ||||<style="text-align:center">Layla Oesper ||University of Wisconsin, Madison, WI ||May-Aug 2010 ||WordCloud Plugin for Cytoscape (Google Summer of Code 2010) || |
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| ||Jochen Weile ||Molecular Genetics ||Sep.2011 ||Pathway analysis || |
Current Members
Bader Lab |
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Associate Professor |
Apr.2006 |
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Post docs |
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Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007 |
Chemical genomics in yeast |
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Jan.2009 |
Multiple perturbations in yeast |
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Jan.2011 |
Cancer genomics |
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Aug.2011 |
Cancer genomics |
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Graduate Students |
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Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab) |
Jan.2009 |
Yeast chemical genomics & Drug target identification |
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Molecular Genetics (co-supervised with Charlie Boone) |
May.2006 |
Genetic interactions in yeast |
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Molecular Genetics |
May.2007 |
Domain specificity |
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Computer Science |
Sep.2008 |
Domain interaction prediction |
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Molecular Genetics |
May.2007 |
Protein complex detection from networks |
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Computer Science |
Sept.2010 |
Network alignment |
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Visiting student from University of Calgary |
May.2011-Dec 2011 |
Master regulators identification using network biology |
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Laboratoire TIMC-IMAG, France, Visiting student |
June.2011-Dec.2011 |
Cancer interactome and alternative splicing |
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Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor) |
Jan.2011 |
Cancer genomics of medulloblastoma |
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Part-time M. Sc. student (co-supervised by Ron Pearlman); software engineer at Tony Pawson's laboratory |
Jan. 2012 |
Computational predictions of protein-protein interactions |
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Undergraduate Students |
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University of Toronto |
May 2010 |
WW domain prediction, PDZ domain prediction |
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Research Staff |
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Research Associate |
Jan.2011 |
Pathway Analysis of Cancer Stem Cells |
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Nov.2007 |
Active cell map |
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Software Developers |
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Jun.2008 |
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Sep.2008 |
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Sep.2008 |
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May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) |
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Nov.2008 |
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Feb.2009 |
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Lab Technicians |
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Jun Gu |
Technician (co-supervised with Dev Sidhu) |
Dec.2010 |
Protein interaction screening |
![[ATTACH]](/Members?action=AttachFile&do=upload_form&ticket=0069087459.0b98ceac9ca101e2f4568946b0b328104ce63205&target=Max.jpg "[ATTACH]"){kind=small}
Past Members
Post Docs |
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Co-supervised with Andrew Emili |
Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) |
Active cell map |
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Dec.2008-Apr.2010 |
Cancer Stem Cells / Active cell map |
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Feb.2008-Feb.2010 |
Specificity and robustness in protein interaction networks |
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Graduate Students |
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Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007-Aug.2011 |
Network evolution |
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China Agricultural University, China, Visiting student |
Sept.2008-Sept.2010 |
Quantitative interaction prediction |
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Software Engineers |
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May.2008-Jun.2010 |
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Aug.2008-Apr.2010 |
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Sep.2007-Dec.2009 |
Integrative Biology of Yeast |
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Jan.2007-Oct.2008 |
Protein interaction prediction |
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Michael Matan |
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Jan-Aug.2007 |
Integrative Biology of Yeast |
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Project Manager |
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Project Manager, Coordinator of Training and Outreach |
Jun.2008-Jun.2010 |
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Quality Assurance |
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QA Analyst |
Jan.2009-Jun.2010 |
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Lab Technicians |
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Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
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Undergraduate Students |
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Adrian Zhu |
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Jan. 2011 |
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University of Waterloo Systems Design Engineering co-op student |
Jan to Apr.2010 |
Yeast systems analysis |
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University of Waterloo Mathematics co-op student |
May to Aug.2009 |
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McMaster University Applied Mathematics co-op student |
May to Aug.2009 |
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University of Toronto Bioinformatics |
May to Aug.2009 |
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McMaster University Biology and Pharmacology co-op student |
May to Aug.2009 |
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University of Waterloo |
Jan-May.2009 |
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University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
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University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
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University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
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Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
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Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
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Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
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Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
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Project Students |
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Layla Oesper |
University of Wisconsin, Madison, WI |
May-Aug 2010 |
WordCloud Plugin for Cytoscape (Google Summer of Code 2010) |
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Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
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Maital Ashkenazi |
Hebrew University, Jerusalem |
May-Aug 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
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Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
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Victoria Mui |
University of Toronto, Computer Science |
May-Aug 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
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Graduate Rotation Students |
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Jochen Weile |
Molecular Genetics |
Sep.2011 |
Pathway analysis |
Akiko Sekikawa |
Molecular Genetics |
Sep.2010 |
Protein interaction network evolution |
Carl Song |
Molecular Genetics |
Dec.2009 |
Pathway analysis |
Gavin Wilson |
Molecular Genetics |
Sep.2009 |
Protein interaction network evolution |
Brad Arshinoff |
Molecular Genetics |
Jan.2009 |
Analyzing yeast high content screening data |
Devon Radford |
Molecular Genetics |
Nov.2008 |
Predicting genetic interactions in yeast from mutations in cell structure |
Ron Ammar |
Molecular Genetics |
Oct.2008 |
Predicting active biomolecules in yeast |
Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |