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| ||<style="text-align:center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Associate Professor ||Apr.2006 || || | ||<style="text-align:center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Professor ||Apr.2006 || || |
| Line 6: | Line 6: |
| ||<style="text-align:center;"> {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] || ||Jan.2011 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || ||Aug.2011 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:Florence.jpg}} ||Florence Cavalli ||with Michael Taylor ||Dec.2011 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:Andrea.jpg}} ||Andrea Uetrecht ||with Jason Moffat ||Feb.2012 ||Protein interactions || ||<style="text-align:center;"> {{attachment:Deena.jpg|alt text|width="150"}} ||Deena Gendoo ||with Annie Huang ||Sept. 2012 ||Cancer genomics on Pediatric Brain Tumours || ||<style="text-align:center;"> {{attachment:RonAmmar/ron_profile.jpg|Ron|width="250"}} ||[[RonAmmar|Ron Ammar]] || ||Aug. 2013 ||MedSavant and The Sick Kids Genome Clinic || ||<style="text-align:center;"> {{attachment:mhelmy3.png}} ||[[MohamedHelmy|Mohamed Helmy]] || ||Sep. 2013 || || |
||<style="text-align:center;"> {{attachment:Shraddha.jpg}} ||[[ShraddhaPai|Shraddha Pai]] || ||Jan. 2015 ||Predicting disease risk/prognosis in mental illness || |
| Line 17: | Line 10: |
| ||<style="text-align:center;"> {{attachment:davids_tn.jpg}} ||[[DavidShih|David Shih]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Jan.2011 ||Cancer genomics of medulloblastoma || ||<style="text-align:center;"> {{attachment:olhovsky.jpg}} ||[[http://baderlab.org/MarinaOlhovsky|Marina Olhovsky]] ||Part-time M. Sc. student (co-supervised with [[http://www.yorku.ca/ronp/|Ron Pearlman]]); software engineer at [[http://pawsonlab.mshri.on.ca|Tony Pawson]]'s lab ||Jan. 2012 ||Computational predictions of protein-protein interactions || ||<style="text-align:center;"> {{attachment:omarwagih.jpg}} ||[[OmarWagih|Omar Wagih]] ||Computer Science ||Sept.2012 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:Pegah.png||height="200px",width="239px"}} ||[[PegahKhosravi|Pegah Khosravi]] ||Bioinformatics ||Oct.2012 ||- || ||<style="text-align:center;"> {{attachment:asha.JPG}} ||[[AshaRostamianfar|Asha Rostamianfar]] ||Computer Science ||Sept.2013 ||- || ||<style="text-align:center;"> {{attachment:Patryk.jpg}} ||[[Patryk Skowron|Patryk Skowron]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Sept.2013 ||Cancer genomics of medulloblastoma || ||<style="text-align:center;"> {{attachment:Ming.jpg}} ||[[LucasHu|Lucas Hu]] ||Molecular of Genetics (co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]]) ||Sept.2013 ||Proteomics || ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:victor.jpg}} ||<style="text-align:center;">[[kofiav|Victor Kofia]] ||University of Toronto ||May-Aug 2013, Sep 2013- present ||Co-Authorship Cytoscape App, Enrichment Map App || ||<style="text-align:center;"> {{attachment:arkady.jpg}} ||<style="text-align:center;"> Arkady Arkhangorodsky || University of Toronto || July-Aug 2013, June 2014 - present ||High dimensional data visualization|| |
||<style="text-align:center;"> {{attachment:Patryk.jpg}} ||[[Patryk Skowron]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Sept.2013 ||Cancer genomics of medulloblastoma || ||<style="text-align:center;"> {{attachment:Lucas.jpg}} ||[[LucasHu|Lucas Hu]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]]) ||Sept.2013 ||WormMap || ||<style="text-align:center;"> {{attachment:StuartPhoto.JPG}} ||[[StuartMatanLithwick|Stuart Matan-Lithwick]] ||Laboratory Medicine & Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||May 2015 || Metastasis in cancer || ||<style="text-align:center;"> {{attachment:Catherine.jpeg|width:"100"}} ||[[Catherine Ross|Catherine Ross]] ||Molecular Genetics (co-supervised with Boone/Andrews lab)|| Dec.2015 ||Computational pipeline to determine signs of natural positive selection for certain biological pathways among different human ethnic populations.|| ||<style="text-align:center;"> {{attachment:binnes.jpg}} ||[[BrendanInnes|Brendan Innes]] || Molecular Genetics || Jan 2016 || Intercellular Signalling || ||<style="text-align:center;"> {{attachment:hamed.jpg}} ||[[Hamed Heydari |Hamed Heydari ]] || Molecular Genetics || Jan 2016 || Genetic interaction network analysis || ||<style="text-align:center;"> {{attachment:duncan.jpg}} ||[[Duncan Forster|Duncan Forster]] || Molecular Genetics (co-supervised with Charlie Boone) ||Feb. 2017 || The unknownome || ||<style="text-align:center;"> {{attachment:gurnit.jpg}} ||[[Gurnit Atwal |Gurnit Atwal ]] || Molecular Genetics (co-supervised with Quaid Morris) || Jan 2017 || Tumour evolution || ||<style="text-align:center;"> {{attachment:johngiorgi.jpg|}}||[[John Giorgi]]||Computer Science||Sept.2017||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|| ||<style="text-align:center;"> {{attachment:owenwhitney.jpg||width=120}}||[[Owen Whitley]]||Molecular Genetics||Sept.2017||||<style="text-align:center;">The Analysis and Integration of various types of '-omics' data to characterize cancer stem cells|| ||<style="text-align:center;"> {{attachment:thinh2.png||width=200}}||[[Thinh Tran]]||Molecular Genetics||Feb. 2018||Single cell RNAseq analysis of heart development lineages|| |
| Line 28: | Line 22: |
| ||<style="text-align:center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Research Staff ||Nov.2007 || Active cell map <<BR>>(Co-supervised with Andrew Emili) || | |
| Line 29: | Line 24: |
| ||<style="text-align:center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align:center;">Active cell map <<BR>>(Co-supervised with Andrew Emili) || ||<style="text-align:center;"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Research Associate ||May.2014||Medical Decision Making || |
||<style="text-align:center;"> {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || Research Associate ||Aug.2011 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Research Associate ||May.2014 ||Medical Decision Making || ||<style="text-align:center;"> {{attachment:Changjiang.jpg}} ||[[ChangjiangXu|Changjiang Xu]] ||Research Associate ||June 2014 ||Statistical data analysis || ||<style="text-align:center;"> {{attachment:AhmadShah.JPG}} ||[[AhmadShah|Ahmad Shah]] ||Research Staff ||Sept.2014 || Precision medicine || ||<style="text-align:center;"> {{attachment:Jeff.jpg}} ||[[JeffLiu|Jeff Liu]] ||Research Associate ||November 2015 ||Pathway Analysis of Cancer Stem Cells || ||<style="text-align:center;"> {{attachment:jeffwong.jpg|Jeffrey Wong|height=120 width=120}} ||[[JeffreyWong|Jeffrey Wong]]|| Research Associate ||Jan 2016||Computational Biology || ||<style="text-align:center;"> {{attachment:MAC_UTO.jpg}} ||[[MariaAbouChakra|Maria Abou Chakra]] ||Research Associate ||July 2016 ||Modeling Organoid Development || |
| Line 32: | Line 32: |
| ||<style="text-align:center;"> {{attachment:Khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align:center;">[[http://www.genemania.org/|GeneMANIA]] || | |
| Line 34: | Line 33: |
| ||<style="text-align:center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align:center;">[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align:center;"> {{attachment:qrcode.png}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align:center;">[[http://www.genemania.org/|GeneMANIA]] || |
||<style="text-align:center;"> {{attachment:qrcode.png|Max Franz|height=120 width=120}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align:center;">[[http://www.genemania.org/|GeneMANIA]] || |
| Line 38: | Line 36: |
| ||<class="table-header">Visiting Scientists ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:Carolyn.jpg|alt text|width="150"}} ||Carolyn Cummins ||Visiting Scientist (Assistant Professor of Pharmacy) ||Nov 2013 ||Pathway and RNA-seq analysis || |
||<style="text-align:center;"> {{attachment:mike-pic.jpg|Mike Kucera|width=150 height=150}} ||[[MikeKucera|Mike Kucera]] ||Sept.2014 ||||<style="text-align:center;">[[http://www.cytoscape.org|Cytoscape]] || ||<class="table-header">Financial Staff ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:Shan.jpg||width="200"}} ||[[ShanGao|Shan Gao]] || May 2017 <<BR>> Jun.2016 - May 2017 ||||<style="text-align:center;"> Financial Administrator <<BR>> Financial and Research Assistant || ||<style="text-align:center;"> {{attachment:patty.jpg||width="200"}} ||[[PatrickScopa|Patrick Scopa]] || Aug.2017 ||||<style="text-align:center;">Financial and Research Assistant || ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:wanxin.jpg||width="200"}} ||Wanxin Li ||University of Waterloo Co-Op Student||Jan.2018 |||| ||<style="text-align:center;"> {{attachment:anon.png||width="200"}} ||Logan Mosier ||University of Waterloo Co-Op Student||Jan.2018 |||| |
| Line 47: | Line 49: |
| ||<style="text-align:center;"> {{attachment:Florian.png}} ||[[FlorianGoebels|Florian Goebels]] || ||Jan.2015-Sep.2017 ||Protein Protein interactions || ||<style="text-align:center;"> {{attachment:mhelmy3.png}} ||[[MohamedHelmy|Mohamed Helmy]] || ||Sep. 2013-Aug.2017 ||Cancer genomics, Cancer mutations analysis || ||<style="text-align:center;"> {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] || ||Jan.2011-July.2015 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:Florence.jpg}} ||Florence Cavalli ||with Michael Taylor ||Dec.2011 - June.2015 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:Andrea.jpg}} ||Andrea Uetrecht ||with Jason Moffat ||Feb.2012-Aug.2015 ||Protein interactions || ||<style="text-align:center;"> {{attachment:RonAmmar/ron_profile.jpg|Ron|width="250"}} ||[[RonAmmar|Ron Ammar]] || ||Aug. 2013-Feb.2015 ||MedSavant and The Sick Kids Genome Clinic || ||<style="text-align:center;"> {{attachment:Deena.jpg|alt text|width="150"}} ||Deena Gendoo ||with Annie Huang ||Sep. 2012 - Oct. 2013 ||Cancer genomics on Pediatric Brain Tumours || |
|
| Line 54: | Line 63: |
| ||<style="text-align:center;"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 ||Domain specificity || | ||<style="text-align:center;"> {{attachment:Alex.jpg}}||[[Alexandra Rasnitsyn |Alexandra Rasnitsyn ]] || Summer student, Molecular Genetics || Jul.2017-Aug.2017 || Precision medicine || ||<style="text-align:center;"> {{attachment:tim.jpg}} ||[[TimothyLau|Timothy Lau]] || Computer Science || Sept.2015-Aug.2017 || Domain-peptide interaction || ||<style="text-align:center;"> {{attachment:Rosario.png}} ||[[Rosario Distefano|Rosario Distefano]] || Visiting student from University of Verona, Italy||Jan-Jul 2016 ||Biological pathway simulation|| ||<style="text-align:center;"> {{attachment:davids_tn.jpg}} ||[[DavidShih|David Shih]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Jan.2011-Aug.2015 ||Cancer genomics of medulloblastoma || ||<style="text-align:center;"> {{attachment:olhovsky.jpg}} ||[[http://baderlab.org/MarinaOlhovsky|Marina Olhovsky]] ||Part-time M. Sc. student (co-supervised with [[http://www.yorku.ca/ronp/|Ron Pearlman]]); software engineer at [[http://pawsonlab.mshri.on.ca|Tony Pawson]]'s lab ||Jan. 2012-Aug.2015 ||Computational predictions of protein-protein interactions || ||<style="text-align:center;"> {{attachment:asha.JPG}} ||[[AshaRostamianfar|Asha Rostamianfar]] ||Computer Science ||Sept.2013-May.2015 ||- || ||<style="text-align:center;"> {{attachment:Pegah.png||height="100px",width="120px"}} ||[[PegahKhosravi|Pegah Khosravi]] ||Bioinformatics ||Oct.2012 - Sep.2014 ||Gene expression regulation || ||<style="text-align:center;"> {{attachment:omarwagih.jpg}} ||[[OmarWagih|Omar Wagih]] ||Computer Science ||Sept.2012 - Dec.2013 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:RonAmmar/ron_profile.jpg|Ron|width="250"}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised with Corey Nislow and Guri Giaever) ||Sep. 2008 - July 2013 ||Genomics technology in yeast, chemical screening || ||<style="text-align:center;"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 - April 2013 ||Domain specificity || |
| Line 61: | Line 79: |
| ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align:center;"> || | ||<class="table-header">Software Developers ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:dylan.jpg||width="150"}}||[[Dylan Fong]]||Nov. 2016||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|| ||<style="text-align:center;"> {{attachment:patrick.jpg||height="116",width="116"}} ||Patrick Magee || ||Oct.2014-Aug.2015 ||||<style="text-align:center;">Pharmacogenetics app, MedSavant || ||<style="text-align:center;"> {{attachment:Khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008-Jan.2015 ||||<style="text-align:center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align:center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] || ||Sep.2008-Aug.2014 ||||<style="text-align:center;">[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] || |
| Line 75: | Line 97: |
| ||<style="text-align:center;"> ||<style="text-align:center;">Diana Nicholls ||University of Toronto ||June-Aug 2013 ||Pathguide.org || ||<style="text-align:center;"> ||<style="text-align:center;">Soumil Narayan ||McMaster University ||May-Aug 2013 ||Cancer genomics analysis || ||<style="text-align:center;"> {{attachment:Alvin.png|xx.jpg|height="116",width="116"}} ||<style="text-align:center;">Alvin Leung ||Mcgill University ||May-Sep 2013 ||Cytoscape || |
||<style="text-align:center;"> {{attachment:valentina.jpg||width="150"}}||[[Valentina Corso]]||Visiting Student From Italy||Aug. 2017 - Feb. 2018||||<style="text-align:center;">|| ||<style="text-align:center;"> {{attachment:luca.jpg||width="200"}}||[[Luca Giudice]]||Visiting Student From Italy||Aug. 2017 - Feb. 2018||||<style="text-align:center;">|| ||<style="text-align:center;"> {{attachment:anon.png}} ||Jonah Dlin ||University of Waterloo Co-Op Student||Sept - Dec 2017 |||| ||<style="text-align:center;"> {{attachment:harsh.jpg||width="200"}} ||Harsh Mistry ||University of Waterloo Co-Op Student||Sept - Dec 2017 |||| ||<style="text-align:center;"> {{attachment:anon.png}} ||Geoffry Elder ||University of Waterloo Co-Op Student||Sept - Dec 2017 |||| ||<style="text-align:center;"> {{attachment:Farzan.jpg|Farzan Taj|width=150 height=150}}||[[Farzan Taj]]||University of Toronto||May- August 2017||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|| ||<style="text-align:center;"> {{attachment:Alex li.jpg|Alexander Li|width=150 height=150}} ||[[AlexanderLi|Alexander Li]] ||University of Toronto||May- August 2017 ||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|||| ||<style="text-align:center;"> {{attachment:Manfred.jpg|Manfred|width=150 height=150}} ||[[ManfredCheung|Manfred Cheung]] ||University of Waterloo||Jan - April 2017 ||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|||| ||<style="text-align:center;"> {{attachment:Peter.jpg|Peter Smith|width=150 height=150}} ||[[PeterSmith|Peter Smith]] ||University of Waterloo||Jan - April 2017 ||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|||| ||<style="text-align:center;"> {{attachment:victor.jpg}} ||<style="text-align:center;">[[kofiav|Victor Kofia]] ||University of Toronto ||May-Aug 2013, Sep 2013- Apr 2013, Sep 2014 - Aug.2015 ||Co-Authorship Cytoscape App, Enrichment Map App, 3D molecule visualization for Google Cardboard || ||<style="text-align:center;"> {{attachment:arkady.jpg}} ||<style="text-align:center;">[[ArkadyArk|Arkady Arkhangorodsky]] ||University of Toronto ||July-Aug 2013, June-Sep 2014 ||High dimensional data visualization, EnrichmentMap annotation || ||<style="text-align:center;"> {{attachment:tristan.jpg}} ||<style="text-align:center;">Tristan Frappier-Brinton ||Queen's University ||July - August 2014 ||Pubmed Publication trends || ||<style="text-align:center;"> ||<style="text-align:center;">Soumil Narayan ||McMaster University ||May 2013-Aug 2015 (3 summers) ||Cancer genomics analysis || ||<style="text-align:center;"> {{attachment:Alvin.png|xx.jpg|height="116",width="116"}} ||<style="text-align:center;">Alvin Leung ||Mcgill University ||May 2013-Aug 2014 ||Cytoscape || ||<style="text-align:center;">{{attachment:RuthGraceWong.jpg}} || Ruth Grace Wong ||University of Western Ontario, Computational Biochemistry ||May-Aug 2014 ||MedSavant Pathway View Extension (Google Summer of code 2014) || ||<style="text-align:center;"> ||<style="text-align:center;">[[Nickolas Goncharenko|Nickolas Goncharenko]] ||McMaster University ||May-Aug.2016 ||Biological pathway simulation || ||<style="text-align:center;"> {{attachment:victor.jpg}} ||<style="text-align:center;">[[kofiav|Victor Kofia]] ||University of Toronto ||May-Aug 2013, Sep 2013- Aug.2015 ||Co-Authorship Cytoscape App, Enrichment Map App || ||<style="text-align:center;"> {{attachment:anon.png}} ||<style="text-align:center;">Diana Nicholls ||University of Toronto ||June-Aug 2013 ||Pathguide.org || |
| Line 97: | Line 134: |
| ||||<style="text-align:center;">Ruth Grace Wong <<BR>> {{attachment:RuthGraceWong.jpg}} ||University of Western Ontario, Computational Biochemistry ||May-Aug 2014 ||MedSavant Pathway View Extension (Google Summer of code 2014) || | |
| Line 107: | Line 143: |
| ||<class="table-header">Visiting Scientists ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:Carolyn.jpg|alt text|width="150"}} ||Carolyn Cummins ||Visiting Scientist (Assistant Professor of Pharmacy) ||Nov 2013 ||Pathway and RNA-seq analysis || |
|
| Line 110: | Line 148: |
| ||Jessie Medeiros ||Molecular Genetics||Feb.2018 |||| ||Thinh Tran ||Molecular Genetics||Jan.2018 |||| ||Kevin Wang ||Molecular Genetics||Jan.2018 |||| ||Charlotte Michelle Nguyen ||Molecular Genetics||Nov.2017 |||| ||Shubham Gupta ||Molecular Genetics||Nov.2017 |||| ||Owen Whitley ||Molecular Genetics||Nov.2017 |||| ||Zain Patel ||Molecular Genetics||Nov.2017 |||| ||James St. Pierre ||Molecular Genetics||Oct.2017 |||| ||Yu-Xi Xiao ||Molecular Genetics||Sept.2017 |||| ||Dustin Sokolowski ||Molecular Genetics||Sept.2017 |||| ||Ibrahim El-Hamamy ||Molecular Genetics ||Mar.2017 ||Network/pathway analysis || ||Katelyn Kozma ||Molecular Genetics ||Feb.2017 ||Network/pathway analysis || ||Ahmad Malik ||Molecular Genetics ||Jan.2017 ||Network/pathway analysis || ||Duncan Forster ||Molecular Genetics ||Nov.2016 ||Network/pathway analysis || ||Gurnit Atwal ||Molecular Genetics ||Nov.2016 ||Network/pathway analysis || ||Hamed Heydari ||Molecular Genetics ||Nov.2015 ||Network/pathway analysis || ||Heather Gibling ||Molecular Genetics ||Sep.2015 ||Network/pathway analysis || ||Jeff Luong ||Molecular Genetics ||Sep.2015 ||Network/pathway analysis || ||Patrick Magee ||Molecular Genetics ||Oct.2014 ||Network/pathway analysis || ||Alyssa Molinaro ||Molecular Genetics ||Sept.2014 ||Pathway analysis || ||Rong Huang ||Molecular Genetics ||Oct.2013 ||Pathway analysis || ||Shixuan Liu ||Molecular Genetics ||Sep.2013 ||Pathway analysis || |
Current Members
Bader Lab |
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||||
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Professor |
Apr.2006 |
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||
Post docs |
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||||
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Jan. 2015 |
Predicting disease risk/prognosis in mental illness |
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Graduate Students |
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||||
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Computer Science |
Sep.2008 |
Domain interaction prediction |
||
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Computer Science |
Sept.2010 |
Network alignment |
||
|
Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor) |
Sept.2013 |
Cancer genomics of medulloblastoma |
||
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Molecular Genetics (co-supervised with Andrew Emili) |
Sept.2013 |
|||
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Laboratory Medicine & Pathobiology (co-supervised with Michael D. Taylor) |
May 2015 |
Metastasis in cancer |
||
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Molecular Genetics (co-supervised with Boone/Andrews lab) |
Dec.2015 |
Computational pipeline to determine signs of natural positive selection for certain biological pathways among different human ethnic populations. |
||
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Molecular Genetics |
Jan 2016 |
Intercellular Signalling |
||
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Molecular Genetics |
Jan 2016 |
Genetic interaction network analysis |
||
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Molecular Genetics (co-supervised with Charlie Boone) |
Feb. 2017 |
The unknownome |
||
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Molecular Genetics (co-supervised with Quaid Morris) |
Jan 2017 |
Tumour evolution |
||
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Computer Science |
Sept.2017 |
|||
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Molecular Genetics |
Sept.2017 |
The Analysis and Integration of various types of '-omics' data to characterize cancer stem cells |
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Molecular Genetics |
Feb. 2018 |
Single cell RNAseq analysis of heart development lineages |
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Research Staff |
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Research Staff |
Nov.2007 |
Active cell map |
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Research Associate |
Jan.2011 |
Pathway Analysis of Cancer Stem Cells |
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Research Associate |
Aug.2011 |
Cancer genomics |
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Research Associate |
May.2014 |
Medical Decision Making |
||
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Research Associate |
June 2014 |
Statistical data analysis |
||
|
Research Staff |
Sept.2014 |
Precision medicine |
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|
Research Associate |
November 2015 |
Pathway Analysis of Cancer Stem Cells |
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Research Associate |
Jan 2016 |
Computational Biology |
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Research Associate |
July 2016 |
Modeling Organoid Development |
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Software Developers |
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Sep.2008 |
||||
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May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) |
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Nov.2008 |
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Feb.2009 |
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Sept.2014 |
||||
Financial Staff |
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May 2017 |
Financial Administrator |
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Aug.2017 |
Financial and Research Assistant |
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Undergraduate Students |
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Wanxin Li |
University of Waterloo Co-Op Student |
Jan.2018 |
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Logan Mosier |
University of Waterloo Co-Op Student |
Jan.2018 |
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Past Members
Post Docs |
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Jan.2015-Sep.2017 |
Protein Protein interactions |
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Sep. 2013-Aug.2017 |
Cancer genomics, Cancer mutations analysis |
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Jan.2011-July.2015 |
Cancer genomics |
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Florence Cavalli |
with Michael Taylor |
Dec.2011 - June.2015 |
Cancer genomics |
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Andrea Uetrecht |
with Jason Moffat |
Feb.2012-Aug.2015 |
Protein interactions |
||
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|
Aug. 2013-Feb.2015 |
MedSavant and The Sick Kids Genome Clinic |
|||
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Deena Gendoo |
with Annie Huang |
Sep. 2012 - Oct. 2013 |
Cancer genomics on Pediatric Brain Tumours |
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Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007-Mar.2012 |
Chemical genomics in yeast |
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Xiaofeng Xin |
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Jul.2010-Nov.2011 |
Protein-protein interactions in C. elegans |
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Jan.2009-Nov.2011 |
Multiple perturbations in yeast |
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Co-supervised with Andrew Emili |
Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) |
Active cell map |
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Dec.2008-Apr.2010 |
Cancer Stem Cells / Active cell map |
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Feb.2008-Feb.2010 |
Specificity and robustness in protein interaction networks |
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Graduate Students |
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Summer student, Molecular Genetics |
Jul.2017-Aug.2017 |
Precision medicine |
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Computer Science |
Sept.2015-Aug.2017 |
Domain-peptide interaction |
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|
Visiting student from University of Verona, Italy |
Jan-Jul 2016 |
Biological pathway simulation |
|||
|
Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor) |
Jan.2011-Aug.2015 |
Cancer genomics of medulloblastoma |
|||
|
Part-time M. Sc. student (co-supervised with Ron Pearlman); software engineer at Tony Pawson's lab |
Jan. 2012-Aug.2015 |
Computational predictions of protein-protein interactions |
|||
|
Computer Science |
Sept.2013-May.2015 |
- |
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Bioinformatics |
Oct.2012 - Sep.2014 |
Gene expression regulation |
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Computer Science |
Sept.2012 - Dec.2013 |
Cancer genomics |
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Molecular Genetics (co-supervised with Corey Nislow and Guri Giaever) |
Sep. 2008 - July 2013 |
Genomics technology in yeast, chemical screening |
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Molecular Genetics |
May.2007 - April 2013 |
Domain specificity |
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Molecular Genetics (co-supervised with Charlie Boone) |
May.2006-Oct.2012 |
Genetic interactions in yeast |
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Visiting student from University of Calgary |
May.2011-Dec 2011 |
Master regulators identification using network biology |
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Laboratoire TIMC-IMAG, France, Visiting student |
June.2011-Dec.2011 |
Cancer interactome and alternative splicing |
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Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007-Aug.2011 |
Network evolution |
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China Agricultural University, China, Visiting student |
Sept.2008-Sept.2010 |
Quantitative interaction prediction |
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Molecular Genetics |
May.2007-2011 |
Protein complex detection from networks |
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Software Developers |
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Nov. 2016 |
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Patrick Magee |
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Oct.2014-Aug.2015 |
Pharmacogenetics app, MedSavant |
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Jun.2008-Jan.2015 |
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Sep.2008-Aug.2014 |
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May.2008-Jun.2010 |
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Aug.2008-Apr.2010 |
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Sep.2007-Dec.2009 |
Integrative Biology of Yeast |
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Jan.2007-Oct.2008 |
Protein interaction prediction |
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Michael Matan |
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Jan-Aug.2007 |
Integrative Biology of Yeast |
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Project Manager |
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Project Manager, Coordinator of Training and Outreach |
Jun.2008-Jun.2010 |
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Quality Assurance |
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QA Analyst |
Jan.2009-Jun.2010 |
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Lab Technicians |
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Jun Gu |
Technician (co-supervised with Dev Sidhu) |
Dec.2010 |
Protein interaction screening |
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Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
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Undergraduate Students |
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Visiting Student From Italy |
Aug. 2017 - Feb. 2018 |
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Visiting Student From Italy |
Aug. 2017 - Feb. 2018 |
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Jonah Dlin |
University of Waterloo Co-Op Student |
Sept - Dec 2017 |
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Harsh Mistry |
University of Waterloo Co-Op Student |
Sept - Dec 2017 |
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Geoffry Elder |
University of Waterloo Co-Op Student |
Sept - Dec 2017 |
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University of Toronto |
May- August 2017 |
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University of Toronto |
May- August 2017 |
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University of Waterloo |
Jan - April 2017 |
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University of Waterloo |
Jan - April 2017 |
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University of Toronto |
May-Aug 2013, Sep 2013- Apr 2013, Sep 2014 - Aug.2015 |
Co-Authorship Cytoscape App, Enrichment Map App, 3D molecule visualization for Google Cardboard |
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University of Toronto |
July-Aug 2013, June-Sep 2014 |
High dimensional data visualization, EnrichmentMap annotation |
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Tristan Frappier-Brinton |
Queen's University |
July - August 2014 |
Pubmed Publication trends |
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Soumil Narayan |
McMaster University |
May 2013-Aug 2015 (3 summers) |
Cancer genomics analysis |
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Alvin Leung |
Mcgill University |
May 2013-Aug 2014 |
Cytoscape |
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Ruth Grace Wong |
University of Western Ontario, Computational Biochemistry |
May-Aug 2014 |
MedSavant Pathway View Extension (Google Summer of code 2014) |
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McMaster University |
May-Aug.2016 |
Biological pathway simulation |
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University of Toronto |
May-Aug 2013, Sep 2013- Aug.2015 |
Co-Authorship Cytoscape App, Enrichment Map App |
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Diana Nicholls |
University of Toronto |
June-Aug 2013 |
Pathguide.org |
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Yue Dong |
University of Toronto |
Dec.2011 - Sep.2013 |
Cytoscape |
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Hussam Kaka |
University of Toronto |
Sep. 2012 - Aug.2013 |
GeneMANIA |
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Luke Chang |
Summer Researcher |
June-Aug 2013 |
GeneMANIA |
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University of Toronto |
May 2010-Aug 2012 |
WW domain prediction, PDZ domain prediction |
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Adrian Zhu |
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Jan. 2011 |
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University of Waterloo Systems Design Engineering co-op student |
Jan to Apr.2010 |
Yeast systems analysis |
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University of Waterloo Mathematics co-op student |
May to Aug.2009 |
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McMaster University Applied Mathematics co-op student |
May to Aug.2009 |
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University of Toronto Bioinformatics |
May to Aug.2009 |
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McMaster University Biology and Pharmacology co-op student |
May to Aug.2009 |
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University of Waterloo |
Jan-May.2009 |
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University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
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University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
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University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
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Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
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Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
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Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
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Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
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Project Students |
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Yue Dong |
University of Toronto |
May-Aug 2012 |
App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012) |
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Bimal Ramdoyal |
University of Toronto |
May-Aug 2011 |
Proteomics analysis (4th year project course) |
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Marek Zaluski |
Concordia University, Montreal |
May-Aug 2011 |
HTML5 prototype for Cytoscape Web (Google Summer of Code 2011) |
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Yue Dong |
University of Toronto |
May-Aug 2011 |
3D Renderer for Cytoscape (Google Summer of Code 2011) |
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Layla Oesper |
University of Wisconsin, Madison, WI |
May-Aug 2010 |
WordCloud Plugin for Cytoscape (Google Summer of Code 2010) |
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Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
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Maital Ashkenazi |
Hebrew University, Jerusalem |
May-Aug 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
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Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
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Victoria Mui |
University of Toronto, Computer Science |
May-Aug 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
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Visiting Scientists |
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Carolyn Cummins |
Visiting Scientist (Assistant Professor of Pharmacy) |
Nov 2013 |
Pathway and RNA-seq analysis |
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Graduate Rotation Students |
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Jessie Medeiros |
Molecular Genetics |
Feb.2018 |
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Thinh Tran |
Molecular Genetics |
Jan.2018 |
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Kevin Wang |
Molecular Genetics |
Jan.2018 |
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Charlotte Michelle Nguyen |
Molecular Genetics |
Nov.2017 |
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Shubham Gupta |
Molecular Genetics |
Nov.2017 |
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Owen Whitley |
Molecular Genetics |
Nov.2017 |
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Zain Patel |
Molecular Genetics |
Nov.2017 |
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James St. Pierre |
Molecular Genetics |
Oct.2017 |
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Yu-Xi Xiao |
Molecular Genetics |
Sept.2017 |
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Dustin Sokolowski |
Molecular Genetics |
Sept.2017 |
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Ibrahim El-Hamamy |
Molecular Genetics |
Mar.2017 |
Network/pathway analysis |
Katelyn Kozma |
Molecular Genetics |
Feb.2017 |
Network/pathway analysis |
Ahmad Malik |
Molecular Genetics |
Jan.2017 |
Network/pathway analysis |
Duncan Forster |
Molecular Genetics |
Nov.2016 |
Network/pathway analysis |
Gurnit Atwal |
Molecular Genetics |
Nov.2016 |
Network/pathway analysis |
Hamed Heydari |
Molecular Genetics |
Nov.2015 |
Network/pathway analysis |
Heather Gibling |
Molecular Genetics |
Sep.2015 |
Network/pathway analysis |
Jeff Luong |
Molecular Genetics |
Sep.2015 |
Network/pathway analysis |
Patrick Magee |
Molecular Genetics |
Oct.2014 |
Network/pathway analysis |
Alyssa Molinaro |
Molecular Genetics |
Sept.2014 |
Pathway analysis |
Rong Huang |
Molecular Genetics |
Oct.2013 |
Pathway analysis |
Shixuan Liu |
Molecular Genetics |
Sep.2013 |
Pathway analysis |
Molecular Genetics |
Nov.2012 |
Enrichment maps |
|
Huayun Hou |
Molecular Genetics |
Oct.2012 |
Pathway analysis |
Jochen Weile |
Molecular Genetics |
Sep.2011 |
Pathway analysis |
Akiko Sekikawa |
Molecular Genetics |
Sep.2010 |
Protein interaction network evolution |
Carl Song |
Molecular Genetics |
Dec.2009 |
Pathway analysis |
Gavin Wilson |
Molecular Genetics |
Sep.2009 |
Protein interaction network evolution |
Brad Arshinoff |
Molecular Genetics |
Jan.2009 |
Analyzing yeast high content screening data |
Devon Radford |
Molecular Genetics |
Nov.2008 |
Predicting genetic interactions in yeast from mutations in cell structure |
Ron Ammar |
Molecular Genetics |
Oct.2008 |
Predicting active biomolecules in yeast |
Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |