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| ||<style="text-align:center;"> {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || ||Aug.2011 ||Cancer genomics || ||<style="text-align:center;"> {{attachment:mhelmy3.png}} ||[[MohamedHelmy|Mohamed Helmy]] || ||Sep. 2013 ||Cancer genomics, Cancer mutations analysis || ||<style="text-align:center;"> {{attachment:Florian.png}} ||[[FlorianGoebels|Florian Goebels]] || ||Jan. 2015 ||Protein Protein interactions || |
|
| Line 10: | Line 7: |
| Line 13: | Line 8: |
| ||<style="text-align:center;"> {{attachment:shobhit.png}} ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Sep.2008 ||Domain interaction prediction || | |
| Line 17: | Line 11: |
| ||<style="text-align:center;"> {{attachment:StuartPhoto.JPG}} ||[[StuartMatanLithwick|Stuart Matan-Lithwick]] ||Laboratory Medicine & Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||May 2015 ||- || ||<style="text-align:center;"> {{attachment:tim.jpg}} ||[[TimothyLau|Timothy Lau]] || Computer Science || Sept 2015 || Domain-peptide interaction || |
||<style="text-align:center;"> {{attachment:StuartPhoto.JPG}} ||[[StuartMatanLithwick|Stuart Matan-Lithwick]] ||Laboratory Medicine & Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||May 2015 || Metastasis in cancer || ||<style="text-align:center;"> {{attachment:Catherine.jpeg|width:"100"}} ||[[Catherine Ross|Catherine Ross]] ||Molecular Genetics (co-supervised with Boone/Andrews lab)|| Dec.2015 ||Computational pipeline to determine signs of natural positive selection for certain biological pathways among different human ethnic populations.|| |
| Line 20: | Line 14: |
| ||<style="text-align:center;"> {{attachment:hamed.jpg}} ||[[Hamed Heydari |Hamed Heydari ]] || Molecular Genetics || Jan 2016 || Genetic interaction network analysis || ||<style="text-align:center;"> {{attachment:duncan.jpg}} ||[[Duncan Forster|Duncan Forster]] || Molecular Genetics (co-supervised with Charlie Boone) ||Feb. 2017 || The unknownome || ||<style="text-align:center;"> {{attachment:gurnit.jpg}} ||[[Gurnit Atwal |Gurnit Atwal ]] || Molecular Genetics (co-supervised with Quaid Morris) || Jan 2017 || Tumour evolution || ||<style="text-align:center;"> {{attachment:johngiorgi.jpg|}}||[[John Giorgi]]||Computer Science||Sept.2017||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|| ||<style="text-align:center;"> {{attachment:owenwhitney.jpg||width=120}}||[[Owen Whitley]]||Molecular Genetics||Sept.2017||||<style="text-align:center;">The Analysis and Integration of various types of '-omics' data to characterize cancer stem cells|| ||<style="text-align:center;"> {{attachment:thinh2.png||width=200}}||[[Thinh Tran]]||Molecular Genetics||Feb. 2018||Single cell RNAseq analysis of heart development lineages|| |
|
| Line 21: | Line 21: |
| ||<style="text-align:center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Research Staff ||Nov.2007 || Active cell map <<BR>>(Co-supervised with Andrew Emili) || | |
| Line 22: | Line 23: |
| ||<style="text-align:center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Research Staff ||Nov.2007 || Active cell map <<BR>>(Co-supervised with Andrew Emili) || | ||<style="text-align:center;"> {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || Research Associate ||Aug.2011 ||Cancer genomics || |
| Line 25: | Line 26: |
| ||<style="text-align:center;"> {{attachment:AhmadShah.JPG}} ||[[AhmadShah|Ahmad Shah]] ||Research Staff ||Sept.2014 ||- || | ||<style="text-align:center;"> {{attachment:AhmadShah.JPG}} ||[[AhmadShah|Ahmad Shah]] ||Research Staff ||Sept.2014 || Precision medicine || |
| Line 27: | Line 28: |
| ||<style="text-align:center;"> {{attachment:jeffwong.jpg|Jeffrey Wong|height=120 width=120}} ||[[JeffreyWong|Jeffrey Wong]]|| Research Associate ||Jan 2016||Computational Biology || | |
| Line 32: | Line 34: |
| ||<style="text-align:center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||Feb.2009 ||||<style="text-align:center;">[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]]<<BR>> [[http://baderlab.org/Genemania/BuildProcess|Build Process]] <<BR>> [[http://www.genemania.org/|GeneMANIA]] || | |
| Line 34: | Line 35: |
| ||<style="text-align:center;"> {{attachment:dylan.jpg||width="150"}}||[[Dylan Fong]]||Nov. 2016||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|| ||<class="table-header">Financial Staff ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:Shan.jpg||width="200"}} ||[[ShanGao|Shan Gao]] || May 2017 <<BR>> Jun.2016 - May 2017 ||||<style="text-align:center;"> Financial Administrator <<BR>> Financial and Research Assistant || ||<style="text-align:center;"> {{attachment:patty.jpg||width="200"}} ||[[PatrickScopa|Patrick Scopa]] || Aug.2017 ||||<style="text-align:center;">Financial and Research Assistant || |
|
| Line 35: | Line 40: |
| ||<style="text-align:center;"> {{attachment:Peter.jpg|Peter Smith|width=150 height=150}}} ||[[PeterSmith|Peter Smith]] ||Jan. 2017 ||||<style="text-align:center;">[[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align:center;"> {{attachment:Manfred.jpg|Manfred Cheung}}||[[Manfred Cheung]]||Jan. 2017||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]<<BR>>[[http://www.cytoscape.org|Cytoscape]] || ||<class="table-header">Staff ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:Shan.jpg||width="150"}} ||[[ShanGao|Shan Gao]] ||Jun.2016 ||||<style="text-align:center;">Financial and Research Assistant || |
||<style="text-align:center;"> {{attachment:caitlin.png||width="200"}} ||Caitlin Christina O'Callaghan ||University of Waterloo Co-Op Student||May.2018 |||| ||<style="text-align:center;"> {{attachment:anon.png||width="100"}} ||Rex Wen ||University of Waterloo Co-Op Student||May.2018 |||| ||<style="text-align:center;"> {{attachment:anon.png||width="100"}} ||Dina Issakova ||University of Toronto Summer Student||May.2018 |||| ||<style="text-align:center;"> {{attachment:anon.png||width="100"}} ||Michael Wrana ||University of Toronto Summer Student||May.2018 |||| |
| Line 45: | Line 50: |
| ||<style="text-align:center;"> {{attachment:Florian.png}} ||[[FlorianGoebels|Florian Goebels]] || ||Jan.2015-Sep.2017 ||Protein Protein interactions || ||<style="text-align:center;"> {{attachment:mhelmy3.png}} ||[[MohamedHelmy|Mohamed Helmy]] || ||Sep. 2013-Aug.2017 ||Cancer genomics, Cancer mutations analysis || |
|
| Line 57: | Line 64: |
| ||<style="text-align:center;"> {{attachment:shobhit.png}} ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Graduated 2018||Domain interaction prediction || ||<style="text-align:center;"> {{attachment:Alex.jpg}}||[[Alexandra Rasnitsyn |Alexandra Rasnitsyn ]] || Summer student, Molecular Genetics || Jul.2017-Aug.2017 || Precision medicine || ||<style="text-align:center;"> {{attachment:tim.jpg}} ||[[TimothyLau|Timothy Lau]] || Computer Science || Sept.2015-Aug.2017 || Domain-peptide interaction || ||<style="text-align:center;"> {{attachment:Rosario.png}} ||[[Rosario Distefano|Rosario Distefano]] || Visiting student from University of Verona, Italy||Jan-Jul 2016 ||Biological pathway simulation|| |
|
| Line 70: | Line 81: |
| ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align:center;"> || | ||<class="table-header">Software Developers ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||Feb.2009-Jun.2018 ||||<style="text-align:center;">[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]]<<BR>> [[http://baderlab.org/Genemania/BuildProcess|Build Process]] <<BR>> [[http://www.genemania.org/|GeneMANIA]] || |
| Line 87: | Line 99: |
| ||<style="text-align:center;"> {{attachment:anon.png||width="100"}} ||Logan Mosier ||University of Waterloo Co-Op Student||Jan.2018-Apr.2018|||| ||<style="text-align:center;"> {{attachment:anon.png||width="100"}} ||Wanxin Li ||University of Waterloo Co-Op Student||Jan.2018-Apr.2018 |||| ||<style="text-align:center;"> {{attachment:valentina.jpg||width="150"}}||[[Valentina Corso]]||Visiting Student From Italy||Aug. 2017 - Feb. 2018||||<style="text-align:center;">|| ||<style="text-align:center;"> {{attachment:luca.jpg||width="200"}}||[[Luca Giudice]]||Visiting Student From Italy||Aug. 2017 - Feb. 2018||||<style="text-align:center;">|| ||<style="text-align:center;"> {{attachment:anon.png}} ||Jonah Dlin ||University of Waterloo Co-Op Student||Sept - Dec 2017 |||| ||<style="text-align:center;"> {{attachment:harsh.jpg||width="200"}} ||Harsh Mistry ||University of Waterloo Co-Op Student||Sept - Dec 2017 |||| ||<style="text-align:center;"> {{attachment:anon.png}} ||Geoffry Elder ||University of Waterloo Co-Op Student||Sept - Dec 2017 |||| ||<style="text-align:center;"> {{attachment:Farzan.jpg|Farzan Taj|width=150 height=150}}||[[Farzan Taj]]||University of Toronto||May- August 2017||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|| ||<style="text-align:center;"> {{attachment:Alex li.jpg|Alexander Li|width=150 height=150}} ||[[AlexanderLi|Alexander Li]] ||University of Toronto||May- August 2017 ||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|||| ||<style="text-align:center;"> {{attachment:Manfred.jpg|Manfred|width=150 height=150}} ||[[ManfredCheung|Manfred Cheung]] ||University of Waterloo||Jan - April 2017 ||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|||| ||<style="text-align:center;"> {{attachment:Peter.jpg|Peter Smith|width=150 height=150}} ||[[PeterSmith|Peter Smith]] ||University of Waterloo||Jan - April 2017 ||||<style="text-align:center;">[[http://www.pathwaycommons.org|Pathway Commons]]|||| |
|
| Line 93: | Line 116: |
| ||<style="text-align:center;"> ||<style="text-align:center;">[[Nickolas Goncharenko|Nickolas Goncharenko]] ||McMaster University ||May-Aug.2016 ||Biological pathway simulation || | |
| Line 94: | Line 118: |
| ||<style="text-align:center;"> ||<style="text-align:center;">Diana Nicholls ||University of Toronto ||June-Aug 2013 ||Pathguide.org || | ||<style="text-align:center;"> {{attachment:anon.png}} ||<style="text-align:center;">Diana Nicholls ||University of Toronto ||June-Aug 2013 ||Pathguide.org || |
| Line 126: | Line 150: |
| ---- /!\ '''Edit conflict - other version:''' ---- ||<class="table-header">Financial Staff ||||||||<class="table-header" style="text-align:center;"> || ||<style="text-align:center;"> {{attachment:Shan.jpg||width="200"}} ||[[ShanGao|Shan Gao]] || May.2017-Aug.2018 <<BR>> Jun.2016 - May 2017 ||||<style="text-align:center;"> Financial Administrator |
|
| Line 128: | Line 155: |
| ||Matthaeus Ware ||Molecular Genetics||Sep.2018 |||| ---- /!\ '''Edit conflict - your version:''' ---- ||<class="table-header">Graduate Rotation Students ||||||<class="table-header" style="text-align:center;"> || ||Matthaeus Ware ||Molecular Genetics||Sep.2018 |||| ---- /!\ '''End of edit conflict''' ---- ||Jessie Medeiros ||Molecular Genetics||Feb.2018 |||| ||Thinh Tran ||Molecular Genetics||Jan.2018 |||| ||Kevin Wang ||Molecular Genetics||Jan.2018 |||| ||Charlotte Michelle Nguyen ||Molecular Genetics||Nov.2017 |||| ||Shubham Gupta ||Molecular Genetics||Nov.2017 |||| ||Owen Whitley ||Molecular Genetics||Nov.2017 |||| ||Zain Patel ||Molecular Genetics||Nov.2017 |||| ||James St. Pierre ||Molecular Genetics||Oct.2017 |||| ||Yu-Xi Xiao ||Molecular Genetics||Sept.2017 |||| ||Dustin Sokolowski ||Molecular Genetics||Sept.2017 |||| ||Ibrahim El-Hamamy ||Molecular Genetics ||Mar.2017 ||Network/pathway analysis || ||Katelyn Kozma ||Molecular Genetics ||Feb.2017 ||Network/pathway analysis || ||Ahmad Malik ||Molecular Genetics ||Jan.2017 ||Network/pathway analysis || ||Duncan Forster ||Molecular Genetics ||Nov.2016 ||Network/pathway analysis || ||Gurnit Atwal ||Molecular Genetics ||Nov.2016 ||Network/pathway analysis || ||Hamed Heydari ||Molecular Genetics ||Nov.2015 ||Network/pathway analysis || ||Heather Gibling ||Molecular Genetics ||Sep.2015 ||Network/pathway analysis || ||Jeff Luong ||Molecular Genetics ||Sep.2015 ||Network/pathway analysis || |
Current Members
Bader Lab |
|
||||
|
Professor |
Apr.2006 |
|
||
Post docs |
|
||||
|
|
Jan. 2015 |
Predicting disease risk/prognosis in mental illness |
||
Graduate Students |
|
||||
|
Computer Science |
Sept.2010 |
Network alignment |
||
|
Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor) |
Sept.2013 |
Cancer genomics of medulloblastoma |
||
|
Molecular Genetics (co-supervised with Andrew Emili) |
Sept.2013 |
|||
|
Laboratory Medicine & Pathobiology (co-supervised with Michael D. Taylor) |
May 2015 |
Metastasis in cancer |
||
|
Molecular Genetics (co-supervised with Boone/Andrews lab) |
Dec.2015 |
Computational pipeline to determine signs of natural positive selection for certain biological pathways among different human ethnic populations. |
||
|
Molecular Genetics |
Jan 2016 |
Intercellular Signalling |
||
|
Molecular Genetics |
Jan 2016 |
Genetic interaction network analysis |
||
|
Molecular Genetics (co-supervised with Charlie Boone) |
Feb. 2017 |
The unknownome |
||
|
Molecular Genetics (co-supervised with Quaid Morris) |
Jan 2017 |
Tumour evolution |
||
|
Computer Science |
Sept.2017 |
|||
|
Molecular Genetics |
Sept.2017 |
The Analysis and Integration of various types of '-omics' data to characterize cancer stem cells |
||
|
Molecular Genetics |
Feb. 2018 |
Single cell RNAseq analysis of heart development lineages |
||
Research Staff |
|
||||
|
Research Staff |
Nov.2007 |
Active cell map |
||
|
Research Associate |
Jan.2011 |
Pathway Analysis of Cancer Stem Cells |
||
|
Research Associate |
Aug.2011 |
Cancer genomics |
||
|
Research Associate |
May.2014 |
Medical Decision Making |
||
|
Research Associate |
June 2014 |
Statistical data analysis |
||
|
Research Staff |
Sept.2014 |
Precision medicine |
||
|
Research Associate |
November 2015 |
Pathway Analysis of Cancer Stem Cells |
||
|
Research Associate |
Jan 2016 |
Computational Biology |
||
|
Research Associate |
July 2016 |
Modeling Organoid Development |
||
Software Developers |
|
||||
|
Sep.2008 |
||||
|
May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) |
||||
|
Nov.2008 |
||||
|
Sept.2014 |
||||
|
Nov. 2016 |
||||
Financial Staff |
|
||||
|
May 2017 |
Financial Administrator |
|||
|
Aug.2017 |
Financial and Research Assistant |
|||
Undergraduate Students |
|
||||
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Caitlin Christina O'Callaghan |
University of Waterloo Co-Op Student |
May.2018 |
||
|
Rex Wen |
University of Waterloo Co-Op Student |
May.2018 |
||
|
Dina Issakova |
University of Toronto Summer Student |
May.2018 |
||
|
Michael Wrana |
University of Toronto Summer Student |
May.2018 |
||
Past Members
Post Docs |
|
|||||
|
|
Jan.2015-Sep.2017 |
Protein Protein interactions |
|||
|
|
Sep. 2013-Aug.2017 |
Cancer genomics, Cancer mutations analysis |
|||
|
|
Jan.2011-July.2015 |
Cancer genomics |
|||
|
Florence Cavalli |
with Michael Taylor |
Dec.2011 - June.2015 |
Cancer genomics |
||
|
Andrea Uetrecht |
with Jason Moffat |
Feb.2012-Aug.2015 |
Protein interactions |
||
|
|
Aug. 2013-Feb.2015 |
MedSavant and The Sick Kids Genome Clinic |
|||
|
Deena Gendoo |
with Annie Huang |
Sep. 2012 - Oct. 2013 |
Cancer genomics on Pediatric Brain Tumours |
||
|
Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007-Mar.2012 |
Chemical genomics in yeast |
|||
|
Xiaofeng Xin |
|
Jul.2010-Nov.2011 |
Protein-protein interactions in C. elegans |
||
|
|
Jan.2009-Nov.2011 |
Multiple perturbations in yeast |
|||
|
Co-supervised with Andrew Emili |
Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) |
Active cell map |
|||
|
|
Dec.2008-Apr.2010 |
Cancer Stem Cells / Active cell map |
|||
|
|
Feb.2008-Feb.2010 |
Specificity and robustness in protein interaction networks |
|||
Graduate Students |
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|||||
|
Computer Science |
Graduated 2018 |
Domain interaction prediction |
|||
|
Summer student, Molecular Genetics |
Jul.2017-Aug.2017 |
Precision medicine |
|||
|
Computer Science |
Sept.2015-Aug.2017 |
Domain-peptide interaction |
|||
|
Visiting student from University of Verona, Italy |
Jan-Jul 2016 |
Biological pathway simulation |
|||
|
Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor) |
Jan.2011-Aug.2015 |
Cancer genomics of medulloblastoma |
|||
|
Part-time M. Sc. student (co-supervised with Ron Pearlman); software engineer at Tony Pawson's lab |
Jan. 2012-Aug.2015 |
Computational predictions of protein-protein interactions |
|||
|
Computer Science |
Sept.2013-May.2015 |
- |
|||
|
Bioinformatics |
Oct.2012 - Sep.2014 |
Gene expression regulation |
|||
|
Computer Science |
Sept.2012 - Dec.2013 |
Cancer genomics |
|||
|
Molecular Genetics (co-supervised with Corey Nislow and Guri Giaever) |
Sep. 2008 - July 2013 |
Genomics technology in yeast, chemical screening |
|||
|
Molecular Genetics |
May.2007 - April 2013 |
Domain specificity |
|||
|
Molecular Genetics (co-supervised with Charlie Boone) |
May.2006-Oct.2012 |
Genetic interactions in yeast |
|||
|
Visiting student from University of Calgary |
May.2011-Dec 2011 |
Master regulators identification using network biology |
|||
|
Laboratoire TIMC-IMAG, France, Visiting student |
June.2011-Dec.2011 |
Cancer interactome and alternative splicing |
|||
|
Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007-Aug.2011 |
Network evolution |
|||
|
China Agricultural University, China, Visiting student |
Sept.2008-Sept.2010 |
Quantitative interaction prediction |
|||
|
Molecular Genetics |
May.2007-2011 |
Protein complex detection from networks |
|||
Software Developers |
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|||||
|
Feb.2009-Jun.2018 |
|||||
|
Patrick Magee |
|
Oct.2014-Aug.2015 |
Pharmacogenetics app, MedSavant |
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|
Jun.2008-Jan.2015 |
|||||
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|
Sep.2008-Aug.2014 |
||||
|
|
May.2008-Jun.2010 |
||||
|
|
Aug.2008-Apr.2010 |
||||
|
|
Sep.2007-Dec.2009 |
Integrative Biology of Yeast |
|||
|
|
Jan.2007-Oct.2008 |
Protein interaction prediction |
|||
|
Michael Matan |
|
Jan-Aug.2007 |
Integrative Biology of Yeast |
||
Project Manager |
|
|||||
|
Project Manager, Coordinator of Training and Outreach |
Jun.2008-Jun.2010 |
||||
Quality Assurance |
|
|||||
|
QA Analyst |
Jan.2009-Jun.2010 |
||||
Lab Technicians |
|
|||||
|
Jun Gu |
Technician (co-supervised with Dev Sidhu) |
Dec.2010 |
Protein interaction screening |
||
|
Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
||
Undergraduate Students |
|
|||||
|
Logan Mosier |
University of Waterloo Co-Op Student |
Jan.2018-Apr.2018 |
|||
|
Wanxin Li |
University of Waterloo Co-Op Student |
Jan.2018-Apr.2018 |
|||
|
Visiting Student From Italy |
Aug. 2017 - Feb. 2018 |
||||
|
Visiting Student From Italy |
Aug. 2017 - Feb. 2018 |
||||
|
Jonah Dlin |
University of Waterloo Co-Op Student |
Sept - Dec 2017 |
|||
|
Harsh Mistry |
University of Waterloo Co-Op Student |
Sept - Dec 2017 |
|||
|
Geoffry Elder |
University of Waterloo Co-Op Student |
Sept - Dec 2017 |
|||
|
University of Toronto |
May- August 2017 |
||||
|
University of Toronto |
May- August 2017 |
||||
|
University of Waterloo |
Jan - April 2017 |
||||
|
University of Waterloo |
Jan - April 2017 |
||||
|
University of Toronto |
May-Aug 2013, Sep 2013- Apr 2013, Sep 2014 - Aug.2015 |
Co-Authorship Cytoscape App, Enrichment Map App, 3D molecule visualization for Google Cardboard |
|||
|
University of Toronto |
July-Aug 2013, June-Sep 2014 |
High dimensional data visualization, EnrichmentMap annotation |
|||
|
Tristan Frappier-Brinton |
Queen's University |
July - August 2014 |
Pubmed Publication trends |
||
|
Soumil Narayan |
McMaster University |
May 2013-Aug 2015 (3 summers) |
Cancer genomics analysis |
||
|
Alvin Leung |
Mcgill University |
May 2013-Aug 2014 |
Cytoscape |
||
|
Ruth Grace Wong |
University of Western Ontario, Computational Biochemistry |
May-Aug 2014 |
MedSavant Pathway View Extension (Google Summer of code 2014) |
||
|
McMaster University |
May-Aug.2016 |
Biological pathway simulation |
|||
|
University of Toronto |
May-Aug 2013, Sep 2013- Aug.2015 |
Co-Authorship Cytoscape App, Enrichment Map App |
|||
|
Diana Nicholls |
University of Toronto |
June-Aug 2013 |
Pathguide.org |
||
|
Yue Dong |
University of Toronto |
Dec.2011 - Sep.2013 |
Cytoscape |
||
|
Hussam Kaka |
University of Toronto |
Sep. 2012 - Aug.2013 |
GeneMANIA |
||
|
Luke Chang |
Summer Researcher |
June-Aug 2013 |
GeneMANIA |
||
|
University of Toronto |
May 2010-Aug 2012 |
WW domain prediction, PDZ domain prediction |
|||
|
Adrian Zhu |
|
Jan. 2011 |
|||
|
University of Waterloo Systems Design Engineering co-op student |
Jan to Apr.2010 |
Yeast systems analysis |
|||
|
University of Waterloo Mathematics co-op student |
May to Aug.2009 |
||||
|
McMaster University Applied Mathematics co-op student |
May to Aug.2009 |
||||
|
University of Toronto Bioinformatics |
May to Aug.2009 |
||||
|
McMaster University Biology and Pharmacology co-op student |
May to Aug.2009 |
||||
|
University of Waterloo |
Jan-May.2009 |
||||
|
University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
|||
|
University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
|||
|
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
|||
|
Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
|||
|
Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
||
|
Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
||
|
Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
||
Project Students |
|
|||||
Yue Dong |
University of Toronto |
May-Aug 2012 |
App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012) |
|||
Bimal Ramdoyal |
University of Toronto |
May-Aug 2011 |
Proteomics analysis (4th year project course) |
|||
Marek Zaluski |
Concordia University, Montreal |
May-Aug 2011 |
HTML5 prototype for Cytoscape Web (Google Summer of Code 2011) |
|||
Yue Dong |
University of Toronto |
May-Aug 2011 |
3D Renderer for Cytoscape (Google Summer of Code 2011) |
|||
Layla Oesper |
University of Wisconsin, Madison, WI |
May-Aug 2010 |
WordCloud Plugin for Cytoscape (Google Summer of Code 2010) |
|||
Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
|||
Maital Ashkenazi |
Hebrew University, Jerusalem |
May-Aug 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
|||
Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
|||
Victoria Mui |
University of Toronto, Computer Science |
May-Aug 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
|||
Visiting Scientists |
|
|||||
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Carolyn Cummins |
Visiting Scientist (Assistant Professor of Pharmacy) |
Nov 2013 |
Pathway and RNA-seq analysis |
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Financial Staff |
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||Shan Gao || May.2017-Aug.2018
Jun.2016 - May 2017 ||||<style="text-align:center;"> Financial Administrator
Graduate Rotation Students |
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Matthaeus Ware |
Molecular Genetics |
Sep.2018 |
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Graduate Rotation Students |
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Matthaeus Ware |
Molecular Genetics |
Sep.2018 |
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Jessie Medeiros |
Molecular Genetics |
Feb.2018 |
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Thinh Tran |
Molecular Genetics |
Jan.2018 |
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Kevin Wang |
Molecular Genetics |
Jan.2018 |
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Charlotte Michelle Nguyen |
Molecular Genetics |
Nov.2017 |
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Shubham Gupta |
Molecular Genetics |
Nov.2017 |
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Owen Whitley |
Molecular Genetics |
Nov.2017 |
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Zain Patel |
Molecular Genetics |
Nov.2017 |
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James St. Pierre |
Molecular Genetics |
Oct.2017 |
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Yu-Xi Xiao |
Molecular Genetics |
Sept.2017 |
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Dustin Sokolowski |
Molecular Genetics |
Sept.2017 |
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Ibrahim El-Hamamy |
Molecular Genetics |
Mar.2017 |
Network/pathway analysis |
Katelyn Kozma |
Molecular Genetics |
Feb.2017 |
Network/pathway analysis |
Ahmad Malik |
Molecular Genetics |
Jan.2017 |
Network/pathway analysis |
Duncan Forster |
Molecular Genetics |
Nov.2016 |
Network/pathway analysis |
Gurnit Atwal |
Molecular Genetics |
Nov.2016 |
Network/pathway analysis |
Hamed Heydari |
Molecular Genetics |
Nov.2015 |
Network/pathway analysis |
Heather Gibling |
Molecular Genetics |
Sep.2015 |
Network/pathway analysis |
Jeff Luong |
Molecular Genetics |
Sep.2015 |
Network/pathway analysis |
Patrick Magee |
Molecular Genetics |
Oct.2014 |
Network/pathway analysis |
Alyssa Molinaro |
Molecular Genetics |
Sept.2014 |
Pathway analysis |
Rong Huang |
Molecular Genetics |
Oct.2013 |
Pathway analysis |
Shixuan Liu |
Molecular Genetics |
Sep.2013 |
Pathway analysis |
Molecular Genetics |
Nov.2012 |
Enrichment maps |
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Huayun Hou |
Molecular Genetics |
Oct.2012 |
Pathway analysis |
Jochen Weile |
Molecular Genetics |
Sep.2011 |
Pathway analysis |
Akiko Sekikawa |
Molecular Genetics |
Sep.2010 |
Protein interaction network evolution |
Carl Song |
Molecular Genetics |
Dec.2009 |
Pathway analysis |
Gavin Wilson |
Molecular Genetics |
Sep.2009 |
Protein interaction network evolution |
Brad Arshinoff |
Molecular Genetics |
Jan.2009 |
Analyzing yeast high content screening data |
Devon Radford |
Molecular Genetics |
Nov.2008 |
Predicting genetic interactions in yeast from mutations in cell structure |
Ron Ammar |
Molecular Genetics |
Oct.2008 |
Predicting active biomolecules in yeast |
Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |