Gary Bader

Professor

Apr.2006

Shraddha Pai

Jan. 2015

Predicting disease risk/prognosis in mental illness

Shobhit Jain

Computer Science

Sep.2008

Domain interaction prediction

Brian Law

Computer Science

Sept.2010

Network alignment

Patryk Skowron

Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor)

Sept.2013

Cancer genomics of medulloblastoma

Lucas Hu

Molecular Genetics (co-supervised with Andrew Emili)

Sept.2013

WormMap

Stuart Matan-Lithwick

Laboratory Medicine & Pathobiology (co-supervised with Michael D. Taylor)

May 2015

Metastasis in cancer

Catherine Ross

Molecular Genetics (co-supervised with Boone/Andrews lab)

Dec.2015

Computational pipeline to determine signs of natural positive selection for certain biological pathways among different human ethnic populations.

Brendan Innes

Molecular Genetics

Jan 2016

Intercellular Signalling

Hamed Heydari

Molecular Genetics

Jan 2016

Genetic interaction network analysis

Duncan Forster

Molecular Genetics (co-supervised with Charlie Boone)

Feb. 2017

The unknownome

Gurnit Atwal

Molecular Genetics (co-supervised with Quaid Morris)

Jan 2017

Tumour evolution

Valentina Corso

Visiting Student From Italy

Aug. 2017

Luca Giudice

Visiting Student From Italy

Aug. 2017

John Giorgi

Computer Science

Sept.2017

Pathway Commons

Ruth Isserlin

Research Staff

Nov.2007

Active cell map
(Co-supervised with Andrew Emili)

Veronique Voisin

Research Associate

Jan.2011

Pathway Analysis of Cancer Stem Cells

Scott Zuyderduyn

Research Associate

Aug.2011

Cancer genomics

Shirley Hui

Research Associate

May.2014

Medical Decision Making

Changjiang Xu

Research Associate

June 2014

Statistical data analysis

Ahmad Shah

Research Staff

Sept.2014

Precision medicine

Jeff Liu

Research Associate

November 2015

Pathway Analysis of Cancer Stem Cells

Maria Abou Chakra

Research Associate

July 2016

Modeling Organoid Development

Jeffrey Wong

Jan.2016

Computational Biology

Christian Lopes

Sep.2008

GeneMANIA Cytoscape

Max Franz

May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009)

GeneMANIA

Igor Rodchenkov

Nov.2008

Pathway Commons
BioPAX Cytoscape

Harold Rodriguez

Feb.2009

Systems Administrator
Build Process
GeneMANIA

Mike Kucera

Sept.2014

Cytoscape

Dylan Fong

Nov. 2016

Pathway Commons

Shan Gao

May 2017
Jun.2016 - May 2017

Financial Administrator
Financial and Research Assistant

Patrick Scopa

Aug.2017

Financial and Research Assistant

Jonah Dlin

University of Waterloo Co-Op Student

Sept.2017

Harsh Mistry

University of Waterloo Co-Op Student

Sept.2017

Geoffry Elder

University of Waterloo Co-Op Student

Sept.2017

Florian Goebels

Jan.2015-Sep.2017

Protein Protein interactions

Mohamed Helmy

Sep. 2013-Aug.2017

Cancer genomics, Cancer mutations analysis

Jüri Reimand

Jan.2011-July.2015

Cancer genomics

Florence Cavalli

with Michael Taylor

Dec.2011 - June.2015

Cancer genomics

Andrea Uetrecht

with Jason Moffat

Feb.2012-Aug.2015

Protein interactions

Ron Ammar

Aug. 2013-Feb.2015

MedSavant and The Sick Kids Genome Clinic

Deena Gendoo

with Annie Huang

Sep. 2012 - Oct. 2013

Cancer genomics on Pediatric Brain Tumours

Iain Wallace

Co-supervised with Guri Giaever and Corey Nislow

Oct.2007-Mar.2012

Chemical genomics in yeast

Xiaofeng Xin

Jul.2010-Nov.2011

Protein-protein interactions in C. elegans

Magali Michaut

Jan.2009-Nov.2011

Multiple perturbations in yeast

Daniele Merico

Co-supervised with Andrew Emili

Jan.2009-Apr.2011 (formerly visiting student since Nov.2007)

Active cell map

Oliver Stueker

Dec.2008-Apr.2010

Cancer Stem Cells / Active cell map

David Gfeller

Feb.2008-Feb.2010

Specificity and robustness in protein interaction networks

Alexandra Rasnitsyn

Summer student, Molecular Genetics

Jul.2017-Aug.2017

Precision medicine

Timothy Lau

Computer Science

Sept.2015-Aug.2017

Domain-peptide interaction

Rosario Distefano

Visiting student from University of Verona, Italy

Jan-Jul 2016

Biological pathway simulation

David Shih

Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor)

Jan.2011-Aug.2015

Cancer genomics of medulloblastoma

Marina Olhovsky

Part-time M. Sc. student (co-supervised with Ron Pearlman); software engineer at Tony Pawson's lab

Jan. 2012-Aug.2015

Computational predictions of protein-protein interactions

Asha Rostamianfar

Computer Science

Sept.2013-May.2015

-

Pegah Khosravi

Bioinformatics

Oct.2012 - Sep.2014

Gene expression regulation

Omar Wagih

Computer Science

Sept.2012 - Dec.2013

Cancer genomics

Ron Ammar

Molecular Genetics (co-supervised with Corey Nislow and Guri Giaever)

Sep. 2008 - July 2013

Genomics technology in yeast, chemical screening

Shirley Hui

Molecular Genetics

May.2007 - April 2013

Domain specificity

Anastasija Baryshnikova

Molecular Genetics (co-supervised with Charlie Boone)

May.2006-Oct.2012

Genetic interactions in yeast

Mohammed Alshalalfa

Visiting student from University of Calgary

May.2011-Dec 2011

Master regulators identification using network biology

Laure Sambourg

Laboratoire TIMC-IMAG, France, Visiting student

June.2011-Dec.2011

Cancer interactome and alternative splicing

Chris Tan

Molecular Genetics (co-supervised with Tony Pawson)

Jan.2007-Aug.2011

Network evolution

Xiaojian Shao

China Agricultural University, China, Visiting student

Sept.2008-Sept.2010

Quantitative interaction prediction

Vuk Pavlovic

Molecular Genetics

May.2007-2011

Protein complex detection from networks

Patrick Magee

Oct.2014-Aug.2015

Pharmacogenetics app, MedSavant

Khalid Zhuberi

Jun.2008-Jan.2015

GeneMANIA

Jason Montojo

Sep.2008-Aug.2014

GeneMANIA Cytoscape

Ovi Comes

May.2008-Jun.2010

GeneMANIA

Rashad Badrawi

Aug.2008-Apr.2010

GeneMANIA/Pathway Commons

Laetitia Morrison

Sep.2007-Dec.2009

Integrative Biology of Yeast

Moyez Dharsee

Jan.2007-Oct.2008

Protein interaction prediction

Michael Matan

Jan-Aug.2007

Integrative Biology of Yeast

Sylva Donaldson

Project Manager, Coordinator of Training and Outreach

Jun.2008-Jun.2010

GeneMANIA

Farzana Kazi

QA Analyst

Jan.2009-Jun.2010

GeneMANIA/Cytoscape/Pathway Commons

Jun Gu

Technician (co-supervised with Dev Sidhu)

Dec.2010

Protein interaction screening

Lianet Lopez

Technician (co-supervised with Charlie Boone)

Oct.2007-Jun.2008

Protein interaction screening

Farzan Taj

University of Toronto

May- August 2017

Pathway Commons

Alexander Li

University of Toronto

May- August 2017

Pathway Commons

Manfred Cheung

University of Waterloo

Jan - April 2017

Pathway Commons

Peter Smith

University of Waterloo

Jan - April 2017

Pathway Commons

Victor Kofia

University of Toronto

May-Aug 2013, Sep 2013- Apr 2013, Sep 2014 - Aug.2015

Co-Authorship Cytoscape App, Enrichment Map App, 3D molecule visualization for Google Cardboard

Arkady Arkhangorodsky

University of Toronto

July-Aug 2013, June-Sep 2014

High dimensional data visualization, EnrichmentMap annotation

Tristan Frappier-Brinton

Queen's University

July - August 2014

Pubmed Publication trends

Soumil Narayan

McMaster University

May 2013-Aug 2015 (3 summers)

Cancer genomics analysis

Alvin Leung

Mcgill University

May 2013-Aug 2014

Cytoscape

Ruth Grace Wong

University of Western Ontario, Computational Biochemistry

May-Aug 2014

MedSavant Pathway View Extension (Google Summer of code 2014)

Nickolas Goncharenko

McMaster University

May-Aug.2016

Biological pathway simulation

Victor Kofia

University of Toronto

May-Aug 2013, Sep 2013- Aug.2015

Co-Authorship Cytoscape App, Enrichment Map App

Diana Nicholls

University of Toronto

June-Aug 2013

Pathguide.org

Yue Dong

University of Toronto

Dec.2011 - Sep.2013

Cytoscape

Hussam Kaka

University of Toronto

Sep. 2012 - Aug.2013

GeneMANIA

Luke Chang

Summer Researcher

June-Aug 2013

GeneMANIA

Xiang Xing

University of Toronto

May 2010-Aug 2012

WW domain prediction, PDZ domain prediction

Adrian Zhu

Jan. 2011

GeneMANIA

Ameen Modhafar

University of Waterloo Systems Design Engineering co-op student

Jan to Apr.2010

Yeast systems analysis

Anson Maitland

University of Waterloo Mathematics co-op student

May to Aug.2009

GeneMANIA

Quentin Shao

McMaster University Applied Mathematics co-op student

May to Aug.2009

GeneMANIA

Michael Tsui

University of Toronto Bioinformatics

May to Aug.2009

GeneMANIA

George Wright

McMaster University Biology and Pharmacology co-op student

May to Aug.2009

GeneMANIA

Pauline Chao

University of Waterloo

Jan-May.2009

GeneMANIA

Benjamin Elliott

University of Toronto Electrical Engineering

May-August.2008

Yeast systems analysis

Ioana Ivan

University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier)

Sep.2006-Aug.2007

Membrane interactions with PDZ domains

Kevin Ha

University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)

Sep-Dec.2006,
Apr-Aug.2007

Colorectal Cancer biomarkers

Stacy Hung

Bioinformatics, UWaterloo

Apr-Aug.2007

Protein interaction prediction

Natalie Yeung

University of Toronto Immunology, 4th year

Jan-July.2007

Cytoscape usability

Aseel Al Dallal

University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)

Jan-Apr.2007

Colorectal Cancer biomarkers

Faisal Naqib

University of Waterloo Faculty of Math(co-supervised with Steve Gallinger)

May-Aug.2006

Colorectal Cancer biomarkers

Yue Dong

University of Toronto

May-Aug 2012

App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012)

Bimal Ramdoyal

University of Toronto

May-Aug 2011

Proteomics analysis (4th year project course)

Marek Zaluski

Concordia University, Montreal

May-Aug 2011

HTML5 prototype for Cytoscape Web (Google Summer of Code 2011)

Yue Dong

University of Toronto

May-Aug 2011

3D Renderer for Cytoscape (Google Summer of Code 2011)

Layla Oesper

University of Wisconsin, Madison, WI

May-Aug 2010

WordCloud Plugin for Cytoscape (Google Summer of Code 2010)

Monica Raj

University of British Columbia

July.2007-April.2008

Predicting in vivo PDZ domain protein interactions (4th year research project)

Maital Ashkenazi

Hebrew University, Jerusalem

May-Aug 2007

Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky)

Anna Rukosuyeva

University of Toronto, Computer Science

Sep.2007-Dec.2008

Viewing compound nodes in Cytoscape (4th year project course)

Victoria Mui

University of Toronto, Computer Science

May-Aug 2008

Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson)

Carolyn Cummins

Visiting Scientist (Assistant Professor of Pharmacy)

Nov 2013

Pathway and RNA-seq analysis

Charlotte Michelle Nguyen

Molecular Genetics

Nov.2017

Shubham Gupta

Molecular Genetics

Nov.2017

Owen Whitley

Molecular Genetics

Nov.2017

Zain Patel

Molecular Genetics

Nov.2017

Yu-Xi Xiao

Molecular Genetics

Sept.2017

Dustin Sokolowski

Molecular Genetics

Sept.2017

Ibrahim El-Hamamy

Molecular Genetics

Mar.2017

Network/pathway analysis

Katelyn Kozma

Molecular Genetics

Feb.2017

Network/pathway analysis

Ahmad Malik

Molecular Genetics

Jan.2017

Network/pathway analysis

Duncan Forster

Molecular Genetics

Nov.2016

Network/pathway analysis

Gurnit Atwal

Molecular Genetics

Nov.2016

Network/pathway analysis

Hamed Heydari

Molecular Genetics

Nov.2015

Network/pathway analysis

Heather Gibling

Molecular Genetics

Sep.2015

Network/pathway analysis

Jeff Luong

Molecular Genetics

Sep.2015

Network/pathway analysis

Patrick Magee

Molecular Genetics

Oct.2014

Network/pathway analysis

Alyssa Molinaro

Molecular Genetics

Sept.2014

Pathway analysis

Rong Huang

Molecular Genetics

Oct.2013

Pathway analysis

Shixuan Liu

Molecular Genetics

Sep.2013

Pathway analysis

Huy Nguyen

Molecular Genetics

Nov.2012

Enrichment maps

Huayun Hou

Molecular Genetics

Oct.2012

Pathway analysis

Jochen Weile

Molecular Genetics

Sep.2011

Pathway analysis

Akiko Sekikawa

Molecular Genetics

Sep.2010

Protein interaction network evolution

Carl Song

Molecular Genetics

Dec.2009

Pathway analysis

Gavin Wilson

Molecular Genetics

Sep.2009

Protein interaction network evolution

Brad Arshinoff

Molecular Genetics

Jan.2009

Analyzing yeast high content screening data

Devon Radford

Molecular Genetics

Nov.2008

Predicting genetic interactions in yeast from mutations in cell structure

Ron Ammar

Molecular Genetics

Oct.2008

Predicting active biomolecules in yeast

Adrian Verster

Molecular Genetics

Sept.2008

Predicting trigenic synthetic lethalic in yeast

Harshika Seepany

Medical Genetics

Oct.2007

PDZ protein interaction specificity analysis

Shirley Hui

Medical Genetics

Mar.2007

Gene expression correlation analysis

Vuk Pavlovic

Medical Genetics

Feb.2007

Protein complex detection

Trevis Alleyne

Medical Genetics

Nov.2006

Protein interactions involving SH3 domains - specificity prediction

Graham Cromar

Medical Genetics

Oct.2006

Protein interactions involving SH3 domains - interaction prediction

Chris Tan

Medical Genetics

Sep.2006

Protein interactions involving SH3 domains - specificity analysis