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| ||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] || ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map || | |
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| ||<style="text-align: center;"> {{attachment:ron.jpg}} ||[[RonAmmar|Ron Ammar]] ||Co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]] ||Jan.2009 ||Yeast chemical genomics & Drug target identification|| | |
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| ||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||[[http://www.sbb.unimi.it/|Università di Milano]] & [[http://bimib.disco.unimib.it/|Università di Milano-Bicocca]], Italy, visiting student ||Nov.2007 ||Active cell map || | |
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| ||<style="text-align: center;"> ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008 ||Quantitative interaction prediction || ||<#e0e0ff style="font-weight: bold; text-align: center;">Undergraduate Students ||||||||<#e0e0ff style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Anson.jpg}} ||[[AnsonMaitland|Anson Maitland]] ||University of Waterloo Mathematics co-op student ||May.2009 ||GeneMANIA || ||<style="text-align: center;"> {{attachment:Quentin.jpg}} ||[[QuentinShao|Quentin Shao]] ||McMaster University Applied Mathematics co-op student ||May.2009 ||GeneMANIA || ||<style="text-align: center;"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] || ||May.2009 ||GeneMANIA || ||<style="text-align: center;"> {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student|| May.2009 ||GeneMANIA || |
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| ||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] ||Senior Bioinformatics Research Programmer ||Jan.2007 ||Protein interaction prediction || ||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] ||Bioinformatics Research Programmer ||Sep.2007 ||Integrative Biology of Yeast || ||<style="text-align: center;"> ||[[RuthIsserlin|Ruth Isserlin]] ||Bioinformatics Research Programmer (co-supervised with Andrew Emili) ||Nov.2007 ||Active cell map || |
||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] ||Jan.2007 ||Protein interaction prediction || ||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] ||Sep.2007 ||Integrative Biology of Yeast || ||<style="text-align: center;"> ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||Active cell map (Co-supervised with Andrew Emili) || ||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] ||May.2008 ||GeneMANIA || ||<style="text-align: center;"> {{attachment:Khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||GeneMANIA || ||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] ||Aug.2008 ||GeneMANIA/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<style="text-align: center;"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||GeneMANIA || ||<style="text-align: center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||GeneMANIA || ||<style="text-align: center;"> ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<#e0e0ff style="font-weight: bold; text-align: center;">Project Manager ||||||||<#e0e0ff style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008 ||GeneMANIA || ||<#e0e0ff style="font-weight: bold; text-align: center;">Quality Assurance ||||||||<#e0e0ff style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009 ||GeneMANIA/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<#e0e0ff style="font-weight: bold; text-align: center;">Sys Admin/Build Process ||||||||<#e0e0ff style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]] & [[http://baderlab.org/Genemania/BuildProcess|Build Process]] ||Feb.2009 ||GeneMANIA || |
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| ||<style="text-align: center;"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||University of Waterloo ||Jan-May.2009 (co-op) ||GeneMANIA || ||<style="text-align: center;"> {{attachment:Pauline.jpg}} ||[[PaulineChao|Pauline Chao]] ||University of Waterloo ||Jan-May.2009 ||GeneMANIA || |
Current Members
Bader Lab |
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Assistant Professor |
Apr.2006 |
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Post docs |
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Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007 |
Chemical genomics in yeast |
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Feb.2008 |
Specificity and robustness in protein interaction networks |
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Dec.2008 |
Cancer Stem Cells / Active cell map |
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Jan.2009 |
Multiple perturbations in yeast |
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Jan.2009 (formerly visiting student since Nov.2007) |
Active cell map |
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Graduate Students |
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Co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab |
Jan.2009 |
Yeast chemical genomics & Drug target identification |
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Molecular Genetics (co-supervised with Charlie Boone) |
May.2006 |
Genetic interactions in yeast |
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Molecular Genetics |
May.2007 |
Domain specificity |
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Computer Science |
Sep.2008 |
Domain interaction prediction |
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Molecular Genetics |
May.2007 |
Protein complex detection from networks |
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Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007 |
Network evolution |
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China Agricultural University, China, Visiting student |
Sept.2008 |
Quantitative interaction prediction |
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Undergraduate Students |
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University of Waterloo Mathematics co-op student |
May.2009 |
GeneMANIA |
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McMaster University Applied Mathematics co-op student |
May.2009 |
GeneMANIA |
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May.2009 |
GeneMANIA |
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McMaster University Biology and Pharmacology co-op student |
May.2009 |
GeneMANIA |
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Software Engineers |
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Jan.2007 |
Protein interaction prediction |
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Sep.2007 |
Integrative Biology of Yeast |
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Nov.2007 |
Active cell map (Co-supervised with Andrew Emili) |
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May.2008 |
GeneMANIA |
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Jun.2008 |
GeneMANIA |
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Aug.2008 |
GeneMANIA/Pathway Commons |
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Sep.2008 |
GeneMANIA |
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Sep.2008 |
GeneMANIA |
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Nov.2008 |
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Project Manager |
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Project Manager, Coordinator of Training and Outreach |
Jun.2008 |
GeneMANIA |
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Quality Assurance |
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QA Analyst |
Jan.2009 |
GeneMANIA/Cytoscape/Pathway Commons |
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Sys Admin/Build Process |
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Feb.2009 |
GeneMANIA |
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![[ATTACH]](/Members?action=AttachFile&do=upload_form&ticket=006904e14e.55e7e1a197d9e34f71c30070bfb2d2121f003326&target=chris.jpg "[ATTACH]"){kind=small}
Past Members
Software Engineers |
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Michael Matan |
Senior Bioinformatics Research Programmer |
Jan-Aug.2007 |
Integrative Biology of Yeast |
Lab Technicians |
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Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
Undergraduate Students |
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University of Waterloo |
Jan-May.2009 (co-op) |
GeneMANIA |
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University of Waterloo |
Jan-May.2009 |
GeneMANIA |
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University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
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University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
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University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
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Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
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Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
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Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
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Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
Project Students |
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Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
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Maital Ashkenazi |
Hebrew University, Jerusalem |
Summer 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
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Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
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Victoria Mui |
University of Toronto, Computer Science |
Summer 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
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![[ATTACH]](/Members?action=AttachFile&do=upload_form&ticket=006904e14e.55e7e1a197d9e34f71c30070bfb2d2121f003326&target=Max.jpg "[ATTACH]"){kind=small}
Graduate Rotation Students |
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Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |