|
Size: 11005
Comment:
|
Size: 12124
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 3: | Line 3: |
| ||<class="table-header">Bader Lab ||||||||<class="table-header"> || | ||<class="table-header">Bader Lab ||||||||<class="table-header" style="text-align: center;"> || |
| Line 5: | Line 5: |
| ||<class="table-header">Post docs ||||||||<class="table-header"> || | ||<class="table-header">Post docs ||||||||<class="table-header" style="text-align: center;"> || |
| Line 7: | Line 7: |
| ||<style="text-align: center;"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008 ||Specificity and robustness in protein interaction networks || ||<style="text-align: center;"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008 ||Cancer Stem Cells / Active cell map || |
|
| Line 10: | Line 8: |
| ||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] || ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map || ||<class="table-header">Graduate Students ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Ron - Moose - 2.JPG}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]]) ||Jan.2009 ||Yeast chemical genomics & Drug target identification || |
||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map || ||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Ron - Moose - 2.JPG|Ron - Moose - 2.JPG}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]]) ||Jan.2009 ||Yeast chemical genomics & Drug target identification || |
| Line 19: | Line 17: |
| ||<class="table-header">Undergraduate Students ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||University of Waterloo ||Sept to Dec.2009 (co-op) ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<class="table-header">Software Engineers ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] ||Jan.2007 ||||<style="text-align: center;">Protein interaction prediction || ||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] ||Sep.2007 ||||<style="text-align: center;">Integrative Biology of Yeast || ||<style="text-align: center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center;">Active cell map (Co-supervised with Andrew Emili) || ||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] ||May.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] || |
||<style="text-align: center;"> {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]]||Computer Science||Sept.2009||TBD|| ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center;">Active cell map <<BR>>(Co-supervised with Andrew Emili) || |
| Line 28: | Line 21: |
| ||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] ||Aug.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || | |
| Line 31: | Line 23: |
| ||<style="text-align: center;"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center;">[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Project Manager ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008 ||[[http://beta.genemania.org|GeneMANIA]] || ||<class="table-header">Quality Assurance ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009 ||[[http://beta.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Sys Admin/Build Process ||||||||<class="table-header"> || |
||<style="text-align: center;"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center;">[[http://www.pathwaycommons.org|Pathway Commons]]<<BR>>[[http://www.biopax.org|BioPAX]] [[http://www.cytoscape.org|Cytoscape]] || ||<class="table-header">Sys Admin/Build Process ||||||||<class="table-header" style="text-align: center;"> || |
| Line 44: | Line 33: |
| ||<class="table-header">Software Engineers ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan ||Senior Bioinformatics Research Programmer ||Jan-Aug.2007 ||Integrative Biology of Yeast || ||<class="table-header">Lab Technicians ||||||||<class="table-header"> || |
||<class="table-header">Post Docs ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008-Apr.2010 ||Cancer Stem Cells / Active cell map || ||<style="text-align: center;"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008-Feb.2010 ||Specificity and robustness in protein interaction networks || ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] || ||May.2008-Jun.2010 ||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] || ||Aug.2008-Apr.2010 ||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] || ||Sep.2007-Dec.2009 ||<style="text-align: center;">Integrative Biology of Yeast || ||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] || ||Jan.2007-Oct.2008 ||<style="text-align: center;">Protein interaction prediction || ||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan || ||Jan-Aug.2007 ||<style="text-align: center;">Integrative Biology of Yeast || ||<class="table-header">Project Manager ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]] || ||<class="table-header">Quality Assurance ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center;"> || |
| Line 48: | Line 48: |
| ||<class="table-header">Undergraduate Students ||||||||<class="table-header"> || | ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Ameen.png}} ||[[AmeenModhafar|Ameen Modhafar]] ||University of Waterloo Systems Design Engineering co-op student ||Jan to Apr.2010 ||Yeast systems analysis || |
| Line 51: | Line 52: |
| ||<style="text-align: center;"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || | ||<style="text-align: center;"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || |
| Line 60: | Line 62: |
| ||<class="table-header">Project Students ||||||||<class="table-header"> || | ||<class="table-header">Project Students ||||||||<class="table-header" style="text-align: center;"> || |
| Line 67: | Line 69: |
| ||<class="table-header">Graduate Rotation Students ||||||<class="table-header"> || | ||<class="table-header">Graduate Rotation Students ||||||<class="table-header" style="text-align: center;"> || ||Carl Song ||Molecular Genetics ||Dec.2009 ||Pathway analysis || ||Gavin Wilson ||Molecular Genetics ||Sep.2009 ||Protein interaction network evolution || |
Current Members
Bader Lab |
|
|||
|
Assistant Professor |
Apr.2006 |
|
|
Post docs |
|
|||
|
Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007 |
Chemical genomics in yeast |
|
|
|
Jan.2009 |
Multiple perturbations in yeast |
|
|
Co-supervised with Andrew Emili |
Jan.2009 (formerly visiting student since Nov.2007) |
Active cell map |
|
Graduate Students |
|
|||
|
Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab) |
Jan.2009 |
Yeast chemical genomics & Drug target identification |
|
|
Molecular Genetics (co-supervised with Charlie Boone) |
May.2006 |
Genetic interactions in yeast |
|
|
Molecular Genetics |
May.2007 |
Domain specificity |
|
|
Computer Science |
Sep.2008 |
Domain interaction prediction |
|
|
Molecular Genetics |
May.2007 |
Protein complex detection from networks |
|
|
Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007 |
Network evolution |
|
|
China Agricultural University, China, Visiting student |
Sept.2008 |
Quantitative interaction prediction |
|
|
Computer Science |
Sept.2009 |
TBD |
|
Software Engineers |
|
|||
|
Nov.2007 |
Active cell map |
||
|
Jun.2008 |
|||
|
Sep.2008 |
|||
|
Sep.2008 |
|||
|
May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) |
|||
|
Nov.2008 |
|||
Sys Admin/Build Process |
|
|||
|
Feb.2009 |
|||
![[ATTACH]](/Members?action=AttachFile&do=upload_form&ticket=006904752c.cab131a4278fc18e54444fa356713bcb2fd40dcb&target=chris.jpg "[ATTACH]"){kind=small}
![[ATTACH]](/Members?action=AttachFile&do=upload_form&ticket=006904752c.cab131a4278fc18e54444fa356713bcb2fd40dcb&target=khalid.jpg "[ATTACH]"){kind=small}
![[ATTACH]](/Members?action=AttachFile&do=upload_form&ticket=006904752c.cab131a4278fc18e54444fa356713bcb2fd40dcb&target=Max.jpg "[ATTACH]"){kind=small}
Past Members
Post Docs |
|
|||
|
|
Dec.2008-Apr.2010 |
Cancer Stem Cells / Active cell map |
|
|
|
Feb.2008-Feb.2010 |
Specificity and robustness in protein interaction networks |
|
Software Engineers |
|
|||
|
|
May.2008-Jun.2010 |
||
|
|
Aug.2008-Apr.2010 |
||
|
|
Sep.2007-Dec.2009 |
Integrative Biology of Yeast |
|
|
|
Jan.2007-Oct.2008 |
Protein interaction prediction |
|
|
Michael Matan |
|
Jan-Aug.2007 |
Integrative Biology of Yeast |
Project Manager |
|
|||
|
Project Manager, Coordinator of Training and Outreach |
Jun.2008-Jun.2010 |
||
Quality Assurance |
|
|||
|
QA Analyst |
Jan.2009-Jun.2010 |
||
Lab Technicians |
|
|||
|
Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
Undergraduate Students |
|
|||
|
University of Waterloo Systems Design Engineering co-op student |
Jan to Apr.2010 |
Yeast systems analysis |
|
|
University of Waterloo Mathematics co-op student |
May to Aug.2009 |
||
|
McMaster University Applied Mathematics co-op student |
May to Aug.2009 |
||
|
University of Toronto Bioinformatics |
May to Aug.2009 |
||
|
McMaster University Biology and Pharmacology co-op student |
May to Aug.2009 |
||
|
University of Waterloo |
Jan-May.2009 |
||
|
University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
|
|
University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
|
|
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
|
|
Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
|
|
Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
|
Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
|
Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
Project Students |
|
|||
Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
|
Maital Ashkenazi |
Hebrew University, Jerusalem |
Summer 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
|
Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
|
Victoria Mui |
University of Toronto, Computer Science |
Summer 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
|
Graduate Rotation Students |
|
||
Carl Song |
Molecular Genetics |
Dec.2009 |
Pathway analysis |
Gavin Wilson |
Molecular Genetics |
Sep.2009 |
Protein interaction network evolution |
Brad Arshinoff |
Molecular Genetics |
Jan.2009 |
Analyzing yeast high content screening data |
Devon Radford |
Molecular Genetics |
Nov.2008 |
Predicting genetic interactions in yeast from mutations in cell structure |
Ron Ammar |
Molecular Genetics |
Oct.2008 |
Predicting active biomolecules in yeast |
Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |