Diff for "Members" - Bader Lab @ The University of Toronto

Differences between revisions 86 and 95 (spanning 9 versions)

Current Members

Bader Lab
	Gary Bader	Assistant Professor	Apr.2006
Post docs
	Iain Wallace	Co-supervised with Guri Giaever and Corey Nislow	Oct.2007	Chemical genomics in yeast
	Magali Michaut		Jan.2009	Multiple perturbations in yeast
	Daniele Merico	Co-supervised with Andrew Emili	Jan.2009 (formerly visiting student since Nov.2007)	Active cell map
Graduate Students
	Ron Ammar	Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab)	Jan.2009	Yeast chemical genomics & Drug target identification
	Anastasija Baryshnikova	Molecular Genetics (co-supervised with Charlie Boone)	May.2006	Genetic interactions in yeast
	Shirley Hui	Molecular Genetics	May.2007	Domain specificity
	Shobhit Jain	Computer Science	Sep.2008	Domain interaction prediction
	Vuk Pavlovic	Molecular Genetics	May.2007	Protein complex detection from networks
	Chris Tan	Molecular Genetics (co-supervised with Tony Pawson)	Jan.2007	Network evolution
	Xiaojian Shao	China Agricultural University, China, Visiting student	Sept.2008	Quantitative interaction prediction
Software Engineers
	Ruth Isserlin	Nov.2007	Active cell map (Co-supervised with Andrew Emili)
	Khalid Zhuberi	Jun.2008	GeneMANIA
	Christian Lopes	Sep.2008	GeneMANIA
	Jason Montojo	Sep.2008	GeneMANIA
	Max Franz	May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009)	GeneMANIA
	Igor Rodchenkov	Nov.2008	Pathway Commons BioPAX Cytoscape
Sys Admin/Build Process
	Harold Rodriguez	Systems Administrator & Build Process	Feb.2009	GeneMANIA

More Photos

Past Members

Post Docs
	Oliver Stueker		Dec.2008-Apr.2010	Cancer Stem Cells / Active cell map
	David Gfeller		Feb.2008-Feb.2010	Specificity and robustness in protein interaction networks
Software Engineers
	Ovi Comes		May.2008-Jun.2010	GeneMANIA
	Rashad Badrawi		Aug.2008-Apr.2010	GeneMANIA/Pathway Commons
	Laetitia Morrison		Sep.2007-Dec.2009	Integrative Biology of Yeast
	Moyez Dharsee		Jan.2007-Oct.2008	Protein interaction prediction
	Michael Matan		Jan-Aug.2007	Integrative Biology of Yeast
Project Manager
	Sylva Donaldson	Project Manager, Coordinator of Training and Outreach	Jun.2008-Jun.2010	GeneMANIA
Quality Assurance
	Farzana Kazi	QA Analyst	Jan.2009-Jun.2010	GeneMANIA/Cytoscape/Pathway Commons
Lab Technicians
	Lianet Lopez	Technician (co-supervised with Charlie Boone)	Oct.2007-Jun.2008	Protein interaction screening
Undergraduate Students
	Ameen Modhafar	University of Waterloo Systems Design Engineering co-op student	Jan to Apr.2010	Yeast systems analysis
	Anson Maitland	University of Waterloo Mathematics co-op student	May to Aug.2009	GeneMANIA
	Quentin Shao	McMaster University Applied Mathematics co-op student	May to Aug.2009	GeneMANIA
	Michael Tsui	University of Toronto Bioinformatics	May to Aug.2009	GeneMANIA
	George Wright	McMaster University Biology and Pharmacology co-op student	May to Aug.2009	GeneMANIA
	Pauline Chao	University of Waterloo	Jan-May.2009	GeneMANIA
	Benjamin Elliott	University of Toronto Electrical Engineering	May-August.2008	Yeast systems analysis
	Ioana Ivan	University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier)	Sep.2006-Aug.2007	Membrane interactions with PDZ domains
	Kevin Ha	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Sep-Dec.2006, Apr-Aug.2007	Colorectal Cancer biomarkers
	Stacy Hung	Bioinformatics, UWaterloo	Apr-Aug.2007	Protein interaction prediction
	Natalie Yeung	University of Toronto Immunology, 4th year	Jan-July.2007	Cytoscape usability
	Aseel Al Dallal	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Jan-Apr.2007	Colorectal Cancer biomarkers
	Faisal Naqib	University of Waterloo Faculty of Math(co-supervised with Steve Gallinger)	May-Aug.2006	Colorectal Cancer biomarkers
Project Students
Monica Raj		University of British Columbia	July.2007-April.2008	Predicting in vivo PDZ domain protein interactions (4th year research project)
Maital Ashkenazi		Hebrew University, Jerusalem	Summer 2007	Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky)
Anna Rukosuyeva		University of Toronto, Computer Science	Sep.2007-Dec.2008	Viewing compound nodes in Cytoscape (4th year project course)
Victoria Mui		University of Toronto, Computer Science	Summer 2008	Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson)

Graduate Rotation Students
Carl Song	Molecular Genetics	Dec.2009	Pathway analysis
Gavin Wilson	Molecular Genetics	Sep.2009	Protein interaction network evolution
Brad Arshinoff	Molecular Genetics	Jan.2009	Analyzing yeast high content screening data
Devon Radford	Molecular Genetics	Nov.2008	Predicting genetic interactions in yeast from mutations in cell structure
Ron Ammar	Molecular Genetics	Oct.2008	Predicting active biomolecules in yeast
Adrian Verster	Molecular Genetics	Sept.2008	Predicting trigenic synthetic lethalic in yeast
Harshika Seepany	Medical Genetics	Oct.2007	PDZ protein interaction specificity analysis
Shirley Hui	Medical Genetics	Mar.2007	Gene expression correlation analysis
Vuk Pavlovic	Medical Genetics	Feb.2007	Protein complex detection
Trevis Alleyne	Medical Genetics	Nov.2006	Protein interactions involving SH3 domains - specificity prediction
Graham Cromar	Medical Genetics	Oct.2006	Protein interactions involving SH3 domains - interaction prediction
Chris Tan	Medical Genetics	Sep.2006	Protein interactions involving SH3 domains - specificity analysis

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-||<style="text-align: center;"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008 ||Specificity and robustness in protein interaction networks ||
||<style="text-align: center;"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008 ||Cancer Stem Cells / Active cell map ||
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-||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] || ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map ||
+||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] || Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map ||
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-||<class="table-header">Undergraduate Students ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||University of Waterloo ||Sept to Dec.2009 (co-op) ||[[http://beta.genemania.org/|GeneMANIA]] ||
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-||<style="text-align: center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center;">Active cell map (Co-supervised with Andrew Emili) ||
||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] ||May.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
+||<style="text-align: center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center;">Active cell map <<BR>>(Co-supervised with Andrew Emili) ||
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-||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] ||Aug.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
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-||<style="text-align: center;"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center;">[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
||<class="table-header">Project Manager ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008 ||[[http://beta.genemania.org|GeneMANIA]] ||
||<class="table-header">Quality Assurance ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009 ||[[http://beta.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
+||<style="text-align: center;"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009)||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center;">[[http://www.pathwaycommons.org|Pathway Commons]]<<BR>>[[http://www.biopax.org|BioPAX]] [[http://www.cytoscape.org|Cytoscape]]||
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+||<class="table-header">Post Docs ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008-Apr.2010 ||Cancer Stem Cells / Active cell map ||
||<style="text-align: center;"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008-Feb.2010 ||Specificity and robustness in protein interaction networks ||
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-||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] ||Sep.2007 ||||<style="text-align: center;">Integrative Biology of Yeast ||
||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] ||Jan.2007 ||||<style="text-align: center;">Protein interaction prediction ||
||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan ||Senior Bioinformatics Research Programmer ||Jan-Aug.2007 ||Integrative Biology of Yeast ||
+||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] || ||May.2008-Jun.2010 ||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] || ||Aug.2008-Apr.2010 ||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] || ||Sep.2007-Dec.2009 ||<style="text-align: center;">Integrative Biology of Yeast ||
||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] || ||Jan.2007-Oct.2008||<style="text-align: center;">Protein interaction prediction ||
||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan || ||Jan-Aug.2007 ||<style="text-align: center;">Integrative Biology of Yeast ||
||<class="table-header">Project Manager ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]] ||
||<class="table-header">Quality Assurance ||||||||<class="table-header"> ||
||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] ||
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+||<style="text-align: center;"> {{attachment:Ameen.png}} ||[[AmeenModhafar|Ameen Modhafar]] ||University of Waterloo Systems Design Engineering co-op student ||Jan to Apr.2010 ||Yeast systems analysis ||
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+||Carl Song||Molecular Genetics ||Dec.2009 ||Pathway analysis ||
||Gavin Wilson||Molecular Genetics ||Sep.2009 ||Protein interaction network evolution ||