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| ||<class="table-header">Bader Lab ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Assistant Professor ||Apr.2006 || || ||<class="table-header">Post docs ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007 ||Chemical genomics in yeast || ||<style="text-align: center;"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009 ||Multiple perturbations in yeast || ||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] || Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map || ||<class="table-header">Graduate Students ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Ron - Moose - 2.JPG}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]]) ||Jan.2009 ||Yeast chemical genomics & Drug target identification || ||<style="text-align: center;"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006 ||Genetic interactions in yeast || |
||<class="table-header">Bader Lab ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Associate Professor ||Apr.2006 || || ||<class="table-header">Post docs ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] || ||Jan.2011 ||Cancer genomics || ||<style="text-align: center;"> {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || ||Aug.2011 ||Cancer genomics || ||<style="text-align: center;"> {{attachment:Florence.jpg}} ||Florence Cavalli ||with Michael Taylor ||Dec.2011 ||Cancer genomics || ||<style="text-align: center;"> {{attachment:Andrea.jpg}} ||Andrea Uetrecht ||with Jason Moffat ||Feb.2012 ||Protein interactions || ||<style="text-align: center;"> {{attachment:Deena.jpg|alt text|width=150}} ||Deena Gendoo ||with Annie Huang ||Sept. 2012 ||Cancer genomics on Pediatric Brain Tumours || ||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Ron - Moose - 2.JPG|Ron - Moose - 2.JPG}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]]) ||Jan.2009 ||Yeast chemical genomics & Drug target identification || |
| Line 14: | Line 15: |
| ||<style="text-align: center;"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007 ||Protein complex detection from networks || ||<style="text-align: center;"> {{attachment:chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007 ||Network evolution || ||<style="text-align: center;"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008 ||Quantitative interaction prediction || ||<class="table-header">Software Engineers ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center;">Active cell map (Co-supervised with Andrew Emili) || ||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] ||May.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009)||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center;">[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Project Manager ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008 ||[[http://beta.genemania.org|GeneMANIA]] || ||<class="table-header">Quality Assurance ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009 ||[[http://beta.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Sys Admin/Build Process ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]] & [[http://baderlab.org/Genemania/BuildProcess|Build Process]] ||Feb.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || |
||<style="text-align: center;"> {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]] ||Computer Science ||Sept.2010 ||Network alignment || ||<style="text-align: center;"> {{attachment:davids_tn.jpg}} ||[[DavidShih|David Shih]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Jan.2011 ||Cancer genomics of medulloblastoma || ||<style="text-align: center;"> {{attachment:olhovsky.jpg}} ||[[http://baderlab.org/MarinaOlhovsky|Marina Olhovsky]] ||Part-time M. Sc. student (co-supervised with [[http://www.yorku.ca/ronp/|Ron Pearlman]]); software engineer at [[http://pawsonlab.mshri.on.ca|Tony Pawson]]'s lab ||Jan. 2012 ||Computational predictions of protein-protein interactions || ||<style="text-align: center;"> {{attachment:omarwagih.jpg}} ||[[OmarWagih|Omar Wagih]] ||Computer Science ||Sept.2012 ||Cancer genomics || ||<style="text-align: center;"> {{attachment:Pegah.png||height="200px",width="239px"}} ||[[PegahKhosravi|Pegah Khosravi]] ||Bioinformatics ||Oct.2012 ||- || ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> ||<style="text-align: center;">Soumil Narayan ||McMaster University ||May 2013 ||- || ||<style="text-align: center;"> {{attachment:Alvin.png|xx.jpg|height="116",width="116"}} ||<style="text-align: center;">Alvin Leung ||Mcgill University ||May 2013 ||Cytoscape || ||<style="text-align: center;"> {{attachment:yue.jpg}} ||<style="text-align: center;">Yue Dong ||University of Toronto ||Dec.2011 ||Cytoscape || ||<style="text-align: center;"> {{attachment:hussam.jpg|xx.jpg|height="116",width="116"}} ||<style="text-align: center;">Hussam Kaka ||University of Toronto ||Sept 2012 ||GeneMANIA || ||<style="text-align: center;">{{attachment:victor.jpg}} ||<style="text-align: center;"> [[kofiav|Victor Kofia]] ||University of Toronto ||May 2013 ||Co-Authorship Cytoscape App || ||<class="table-header">Research Staff ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Veronique.png}} ||[[VeroniqueVoisin|Veronique Voisin]] ||Research Associate ||Jan.2011 ||Pathway Analysis of Cancer Stem Cells || ||<style="text-align: center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center;">Active cell map <<BR>>(Co-supervised with Andrew Emili) || ||<class="table-header">Software Developers ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align: center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align: center;"> {{attachment:qrcode.png}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center;">[[http://www.pathwaycommons.org|Pathway Commons]]<<BR>>[[http://www.biopax.org|BioPAX]] [[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align: center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||Feb.2009 ||||<style="text-align: center;">[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]]<<BR>> [[http://baderlab.org/Genemania/BuildProcess|Build Process]] <<BR>> [[http://www.genemania.org/|GeneMANIA]] || ||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Jun.jpg}} ||Jun Gu ||Technician (co-supervised with [[http://www.thedonnellycentre.utoronto.ca/members/sachdev_sidhu.html|Dev Sidhu]]) ||Dec.2010 ||Protein interaction screening || |
| Line 37: | Line 44: |
| ||<class="table-header">Post Docs ||||||||<class="table-header"> || | ||<class="table-header">Post Docs ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007-Mar.2012 ||Chemical genomics in yeast || ||<style="text-align: center;"> {{attachment:xiaofeng.jpeg}} ||Xiaofeng Xin || ||Jul.2010-Nov.2011 ||Protein-protein interactions in C. elegans || ||<style="text-align: center;"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009-Nov.2011 ||Multiple perturbations in yeast || ||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) ||Active cell map || |
| Line 40: | Line 51: |
| ||<class="table-header">Software Engineers ||||||||<class="table-header"> || ||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] ||Aug.2008-Apr.2010 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] ||Sep.2007-Dec.2009 ||||<style="text-align: center;">Integrative Biology of Yeast || ||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] ||Jan.2007-Oct.2008||||<style="text-align: center;">Protein interaction prediction || ||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan ||Senior Bioinformatics Research Programmer ||Jan-Aug.2007 ||Integrative Biology of Yeast || ||<class="table-header">Lab Technicians ||||||||<class="table-header"> || |
||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006-Oct.2012 ||Genetic interactions in yeast || ||<style="text-align: center;"> {{attachment:MohammedAlshalalfa.jpg}} ||[[Mohammed Alshalalfa]] ||Visiting student from University of Calgary ||May.2011-Dec 2011 ||Master regulators identification using network biology || ||<style="text-align: center;"> {{attachment:sambourg.png}} ||[[LaureSambourg|Laure Sambourg]] ||[[http://www-timc.imag.fr/?lang=en|Laboratoire TIMC-IMAG]], France, Visiting student ||June.2011-Dec.2011 ||Cancer interactome and alternative splicing || ||<style="text-align: center;"> {{attachment:Chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007-Aug.2011 ||Network evolution || ||<style="text-align: center;"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008-Sept.2010 ||Quantitative interaction prediction || ||<style="text-align: center;"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007-2011 ||Protein complex detection from networks || ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] || ||May.2008-Jun.2010 ||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] || ||Aug.2008-Apr.2010 ||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] || ||Sep.2007-Dec.2009 ||<style="text-align: center;">Integrative Biology of Yeast || ||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] || ||Jan.2007-Oct.2008 ||<style="text-align: center;">Protein interaction prediction || ||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan || ||Jan-Aug.2007 ||<style="text-align: center;">Integrative Biology of Yeast || ||<class="table-header">Project Manager ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]] || ||<class="table-header">Quality Assurance ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center;"> || |
| Line 47: | Line 70: |
| ||<class="table-header">Undergraduate Students ||||||||<class="table-header"> || | ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:xx.jpg}} ||[[XiangXing|Xiang Xing]] ||University of Toronto ||May 2010-Aug 2012 ||WW domain prediction, PDZ domain prediction || ||<style="text-align: center;"> {{attachment:adrian.jpg}} ||Adrian Zhu || ||Jan. 2011 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Ameen.png}} ||[[AmeenModhafar|Ameen Modhafar]] ||University of Waterloo Systems Design Engineering co-op student ||Jan to Apr.2010 ||Yeast systems analysis || |
| Line 50: | Line 76: |
| ||<style="text-align: center;"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || | ||<style="text-align: center;"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || |
| Line 60: | Line 86: |
| ||<class="table-header">Project Students ||||||||<class="table-header"> || | ||<class="table-header">Project Students ||||||||<class="table-header" style="text-align: center;"> || ||||<style="text-align: center;">Yue Dong ||University of Toronto ||May-Aug 2012 ||App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012) || ||||<style="text-align: center;">Bimal Ramdoyal ||University of Toronto ||May-Aug 2011 ||Proteomics analysis (4th year project course) || ||||<style="text-align: center;">Marek Zaluski ||Concordia University, Montreal ||May-Aug 2011 ||HTML5 prototype for Cytoscape Web (Google Summer of Code 2011) || ||||<style="text-align: center;">Yue Dong ||University of Toronto ||May-Aug 2011 ||3D Renderer for Cytoscape (Google Summer of Code 2011) || ||||<style="text-align: center;">Layla Oesper ||University of Wisconsin, Madison, WI ||May-Aug 2010 ||WordCloud Plugin for Cytoscape (Google Summer of Code 2010) || |
| Line 62: | Line 93: |
| ||||<style="text-align: center;">Maital Ashkenazi ||Hebrew University, Jerusalem ||Summer 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) || | ||||<style="text-align: center;">Maital Ashkenazi ||Hebrew University, Jerusalem ||May-Aug 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) || |
| Line 64: | Line 95: |
| ||||<style="text-align: center;">Victoria Mui ||University of Toronto, Computer Science ||Summer 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) || | ||||<style="text-align: center;">Victoria Mui ||University of Toronto, Computer Science ||May-Aug 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) || |
| Line 67: | Line 98: |
| ||<class="table-header">Graduate Rotation Students ||||||<class="table-header"> || ||Carl Song||Molecular Genetics ||Dec.2009 ||Pathway analysis || ||Gavin Wilson||Molecular Genetics ||Sep.2009 ||Protein interaction network evolution || |
||<class="table-header">Graduate Rotation Students ||||||<class="table-header" style="text-align: center;"> || ||[[HuyNguyen|Huy Nguyen]] ||Molecular Genetics ||Nov.2012 ||Enrichment maps || ||Huayun Hou ||Molecular Genetics ||Oct.2012 ||Pathway analysis || ||Jochen Weile ||Molecular Genetics ||Sep.2011 ||Pathway analysis || ||Akiko Sekikawa ||Molecular Genetics ||Sep.2010 ||Protein interaction network evolution || ||Carl Song ||Molecular Genetics ||Dec.2009 ||Pathway analysis || ||Gavin Wilson ||Molecular Genetics ||Sep.2009 ||Protein interaction network evolution || |
Current Members
Bader Lab |
|
|||
|
Associate Professor |
Apr.2006 |
|
|
Post docs |
|
|||
|
|
Jan.2011 |
Cancer genomics |
|
|
|
Aug.2011 |
Cancer genomics |
|
|
Florence Cavalli |
with Michael Taylor |
Dec.2011 |
Cancer genomics |
|
Andrea Uetrecht |
with Jason Moffat |
Feb.2012 |
Protein interactions |
|
Deena Gendoo |
with Annie Huang |
Sept. 2012 |
Cancer genomics on Pediatric Brain Tumours |
Graduate Students |
|
|||
|
Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab) |
Jan.2009 |
Yeast chemical genomics & Drug target identification |
|
|
Molecular Genetics |
May.2007 |
Domain specificity |
|
|
Computer Science |
Sep.2008 |
Domain interaction prediction |
|
|
Computer Science |
Sept.2010 |
Network alignment |
|
|
Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor) |
Jan.2011 |
Cancer genomics of medulloblastoma |
|
|
Part-time M. Sc. student (co-supervised with Ron Pearlman); software engineer at Tony Pawson's lab |
Jan. 2012 |
Computational predictions of protein-protein interactions |
|
|
Computer Science |
Sept.2012 |
Cancer genomics |
|
|
Bioinformatics |
Oct.2012 |
- |
|
Undergraduate Students |
|
|||
|
Soumil Narayan |
McMaster University |
May 2013 |
- |
|
Alvin Leung |
Mcgill University |
May 2013 |
Cytoscape |
|
Yue Dong |
University of Toronto |
Dec.2011 |
Cytoscape |
|
Hussam Kaka |
University of Toronto |
Sept 2012 |
GeneMANIA |
|
University of Toronto |
May 2013 |
Co-Authorship Cytoscape App |
|
Research Staff |
|
|||
|
Research Associate |
Jan.2011 |
Pathway Analysis of Cancer Stem Cells |
|
|
Nov.2007 |
Active cell map |
||
Software Developers |
|
|||
|
Jun.2008 |
|||
|
Sep.2008 |
|||
|
Sep.2008 |
|||
|
May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) |
|||
|
Nov.2008 |
|||
|
Feb.2009 |
|||
Lab Technicians |
|
|||
|
Jun Gu |
Technician (co-supervised with Dev Sidhu) |
Dec.2010 |
Protein interaction screening |
Past Members
Post Docs |
|
||||
|
Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007-Mar.2012 |
Chemical genomics in yeast |
||
|
Xiaofeng Xin |
|
Jul.2010-Nov.2011 |
Protein-protein interactions in C. elegans |
|
|
|
Jan.2009-Nov.2011 |
Multiple perturbations in yeast |
||
|
Co-supervised with Andrew Emili |
Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) |
Active cell map |
||
|
|
Dec.2008-Apr.2010 |
Cancer Stem Cells / Active cell map |
||
|
|
Feb.2008-Feb.2010 |
Specificity and robustness in protein interaction networks |
||
Graduate Students |
|
||||
|
Molecular Genetics (co-supervised with Charlie Boone) |
May.2006-Oct.2012 |
Genetic interactions in yeast |
||
|
Visiting student from University of Calgary |
May.2011-Dec 2011 |
Master regulators identification using network biology |
||
|
Laboratoire TIMC-IMAG, France, Visiting student |
June.2011-Dec.2011 |
Cancer interactome and alternative splicing |
||
|
Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007-Aug.2011 |
Network evolution |
||
|
China Agricultural University, China, Visiting student |
Sept.2008-Sept.2010 |
Quantitative interaction prediction |
||
|
Molecular Genetics |
May.2007-2011 |
Protein complex detection from networks |
||
Software Engineers |
|
||||
|
|
May.2008-Jun.2010 |
|||
|
|
Aug.2008-Apr.2010 |
|||
|
|
Sep.2007-Dec.2009 |
Integrative Biology of Yeast |
||
|
|
Jan.2007-Oct.2008 |
Protein interaction prediction |
||
|
Michael Matan |
|
Jan-Aug.2007 |
Integrative Biology of Yeast |
|
Project Manager |
|
||||
|
Project Manager, Coordinator of Training and Outreach |
Jun.2008-Jun.2010 |
|||
Quality Assurance |
|
||||
|
QA Analyst |
Jan.2009-Jun.2010 |
|||
Lab Technicians |
|
||||
|
Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
|
Undergraduate Students |
|
||||
|
University of Toronto |
May 2010-Aug 2012 |
WW domain prediction, PDZ domain prediction |
||
|
Adrian Zhu |
|
Jan. 2011 |
||
|
University of Waterloo Systems Design Engineering co-op student |
Jan to Apr.2010 |
Yeast systems analysis |
||
|
University of Waterloo Mathematics co-op student |
May to Aug.2009 |
|||
|
McMaster University Applied Mathematics co-op student |
May to Aug.2009 |
|||
|
University of Toronto Bioinformatics |
May to Aug.2009 |
|||
|
McMaster University Biology and Pharmacology co-op student |
May to Aug.2009 |
|||
|
University of Waterloo |
Jan-May.2009 |
|||
|
University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
||
|
University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
||
|
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
||
|
Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
||
|
Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
|
|
Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
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Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
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Project Students |
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Yue Dong |
University of Toronto |
May-Aug 2012 |
App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012) |
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Bimal Ramdoyal |
University of Toronto |
May-Aug 2011 |
Proteomics analysis (4th year project course) |
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Marek Zaluski |
Concordia University, Montreal |
May-Aug 2011 |
HTML5 prototype for Cytoscape Web (Google Summer of Code 2011) |
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Yue Dong |
University of Toronto |
May-Aug 2011 |
3D Renderer for Cytoscape (Google Summer of Code 2011) |
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Layla Oesper |
University of Wisconsin, Madison, WI |
May-Aug 2010 |
WordCloud Plugin for Cytoscape (Google Summer of Code 2010) |
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Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
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Maital Ashkenazi |
Hebrew University, Jerusalem |
May-Aug 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
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Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
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Victoria Mui |
University of Toronto, Computer Science |
May-Aug 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
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Graduate Rotation Students |
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Molecular Genetics |
Nov.2012 |
Enrichment maps |
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Huayun Hou |
Molecular Genetics |
Oct.2012 |
Pathway analysis |
Jochen Weile |
Molecular Genetics |
Sep.2011 |
Pathway analysis |
Akiko Sekikawa |
Molecular Genetics |
Sep.2010 |
Protein interaction network evolution |
Carl Song |
Molecular Genetics |
Dec.2009 |
Pathway analysis |
Gavin Wilson |
Molecular Genetics |
Sep.2009 |
Protein interaction network evolution |
Brad Arshinoff |
Molecular Genetics |
Jan.2009 |
Analyzing yeast high content screening data |
Devon Radford |
Molecular Genetics |
Nov.2008 |
Predicting genetic interactions in yeast from mutations in cell structure |
Ron Ammar |
Molecular Genetics |
Oct.2008 |
Predicting active biomolecules in yeast |
Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |