Diff for "Members" - Bader Lab @ The University of Toronto

Differences between revisions 96 and 165 (spanning 69 versions)

Current Members

Bader Lab
	Gary Bader	Associate Professor	Apr.2006
Post docs
	Jüri Reimand		Jan.2011	Cancer genomics
	Scott Zuyderduyn		Aug.2011	Cancer genomics
	Florence Cavalli	with Michael Taylor	Dec.2011	Cancer genomics
	Andrea Uetrecht	with Jason Moffat	Feb.2012	Protein interactions
	Deena Gendoo	with Annie Huang	Sept. 2012	Cancer genomics on Pediatric Brain Tumours
Graduate Students
	Ron Ammar	Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the HIPHOP Lab)	Jan.2009	Yeast chemical genomics & Drug target identification
	Shirley Hui	Molecular Genetics	May.2007	Domain specificity
	Shobhit Jain	Computer Science	Sep.2008	Domain interaction prediction
	Brian Law	Computer Science	Sept.2010	Network alignment
	David Shih	Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor)	Jan.2011	Cancer genomics of medulloblastoma
	Marina Olhovsky	Part-time M. Sc. student (co-supervised with Ron Pearlman); software engineer at Tony Pawson's lab	Jan. 2012	Computational predictions of protein-protein interactions
	Omar Wagih	Computer Science	Sept.2012	Cancer genomics
	Pegah Khosravi	Bioinformatics	Oct.2012	-
Undergraduate Students
	Soumil Narayan	McMaster University	May 2013	-
	Alvin Leung	McGill University	May 2013	Cytoscape
	Yue Dong	University of Toronto	Dec.2011	Cytoscape
	Hussam Kaka	University of Toronto	Sept 2012	GeneMANIA
	Victor Kofia	University of Toronto	May 2013	Co-Authorship Cytoscape App
Research Staff
	Veronique Voisin	Research Associate	Jan.2011	Pathway Analysis of Cancer Stem Cells
	Ruth Isserlin	Nov.2007	Active cell map (Co-supervised with Andrew Emili)
Software Developers
	Khalid Zhuberi	Jun.2008	GeneMANIA
	Christian Lopes	Sep.2008	GeneMANIA Cytoscape
	Jason Montojo	Sep.2008	GeneMANIA Cytoscape
	Max Franz	May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009)	GeneMANIA
	Igor Rodchenkov	Nov.2008	Pathway Commons BioPAX Cytoscape
	Harold Rodriguez	Feb.2009	Systems Administrator Build Process GeneMANIA
Lab Technicians
	Jun Gu	Technician (co-supervised with Dev Sidhu)	Dec.2010	Protein interaction screening

More Photos

Past Members

Post Docs
	Iain Wallace	Co-supervised with Guri Giaever and Corey Nislow	Oct.2007-Mar.2012	Chemical genomics in yeast
	Xiaofeng Xin		Jul.2010-Nov.2011	Protein-protein interactions in C. elegans
	Magali Michaut		Jan.2009-Nov.2011	Multiple perturbations in yeast
	Daniele Merico	Co-supervised with Andrew Emili	Jan.2009-Apr.2011 (formerly visiting student since Nov.2007)	Active cell map
	Oliver Stueker		Dec.2008-Apr.2010	Cancer Stem Cells / Active cell map
	David Gfeller		Feb.2008-Feb.2010	Specificity and robustness in protein interaction networks
Graduate Students
	Anastasija Baryshnikova	Molecular Genetics (co-supervised with Charlie Boone)	May.2006-Oct.2012	Genetic interactions in yeast
	Mohammed Alshalalfa	Visiting student from University of Calgary	May.2011-Dec 2011	Master regulators identification using network biology
	Laure Sambourg	Laboratoire TIMC-IMAG, France, Visiting student	June.2011-Dec.2011	Cancer interactome and alternative splicing
	Chris Tan	Molecular Genetics (co-supervised with Tony Pawson)	Jan.2007-Aug.2011	Network evolution
	Xiaojian Shao	China Agricultural University, China, Visiting student	Sept.2008-Sept.2010	Quantitative interaction prediction
	Vuk Pavlovic	Molecular Genetics	May.2007-2011	Protein complex detection from networks
Software Engineers
	Ovi Comes		May.2008-Jun.2010	GeneMANIA
	Rashad Badrawi		Aug.2008-Apr.2010	GeneMANIA/Pathway Commons
	Laetitia Morrison		Sep.2007-Dec.2009	Integrative Biology of Yeast
	Moyez Dharsee		Jan.2007-Oct.2008	Protein interaction prediction
	Michael Matan		Jan-Aug.2007	Integrative Biology of Yeast
Project Manager
	Sylva Donaldson	Project Manager, Coordinator of Training and Outreach	Jun.2008-Jun.2010	GeneMANIA
Quality Assurance
	Farzana Kazi	QA Analyst	Jan.2009-Jun.2010	GeneMANIA/Cytoscape/Pathway Commons
Lab Technicians
	Lianet Lopez	Technician (co-supervised with Charlie Boone)	Oct.2007-Jun.2008	Protein interaction screening
Undergraduate Students
	Xiang Xing	University of Toronto	May 2010-Aug 2012	WW domain prediction, PDZ domain prediction
	Adrian Zhu		Jan. 2011	GeneMANIA
	Ameen Modhafar	University of Waterloo Systems Design Engineering co-op student	Jan to Apr.2010	Yeast systems analysis
	Anson Maitland	University of Waterloo Mathematics co-op student	May to Aug.2009	GeneMANIA
	Quentin Shao	McMaster University Applied Mathematics co-op student	May to Aug.2009	GeneMANIA
	Michael Tsui	University of Toronto Bioinformatics	May to Aug.2009	GeneMANIA
	George Wright	McMaster University Biology and Pharmacology co-op student	May to Aug.2009	GeneMANIA
	Pauline Chao	University of Waterloo	Jan-May.2009	GeneMANIA
	Benjamin Elliott	University of Toronto Electrical Engineering	May-August.2008	Yeast systems analysis
	Ioana Ivan	University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier)	Sep.2006-Aug.2007	Membrane interactions with PDZ domains
	Kevin Ha	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Sep-Dec.2006, Apr-Aug.2007	Colorectal Cancer biomarkers
	Stacy Hung	Bioinformatics, UWaterloo	Apr-Aug.2007	Protein interaction prediction
	Natalie Yeung	University of Toronto Immunology, 4th year	Jan-July.2007	Cytoscape usability
	Aseel Al Dallal	University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger)	Jan-Apr.2007	Colorectal Cancer biomarkers
	Faisal Naqib	University of Waterloo Faculty of Math(co-supervised with Steve Gallinger)	May-Aug.2006	Colorectal Cancer biomarkers
Project Students
Yue Dong		University of Toronto	May-Aug 2012	App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012)
Bimal Ramdoyal		University of Toronto	May-Aug 2011	Proteomics analysis (4th year project course)
Marek Zaluski		Concordia University, Montreal	May-Aug 2011	HTML5 prototype for Cytoscape Web (Google Summer of Code 2011)
Yue Dong		University of Toronto	May-Aug 2011	3D Renderer for Cytoscape (Google Summer of Code 2011)
Layla Oesper		University of Wisconsin, Madison, WI	May-Aug 2010	WordCloud Plugin for Cytoscape (Google Summer of Code 2010)
Monica Raj		University of British Columbia	July.2007-April.2008	Predicting in vivo PDZ domain protein interactions (4th year research project)
Maital Ashkenazi		Hebrew University, Jerusalem	May-Aug 2007	Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky)
Anna Rukosuyeva		University of Toronto, Computer Science	Sep.2007-Dec.2008	Viewing compound nodes in Cytoscape (4th year project course)
Victoria Mui		University of Toronto, Computer Science	May-Aug 2008	Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson)

Graduate Rotation Students
Huy Nguyen	Molecular Genetics	Nov.2012	Enrichment maps
Huayun Hou	Molecular Genetics	Oct.2012	Pathway analysis
Jochen Weile	Molecular Genetics	Sep.2011	Pathway analysis
Akiko Sekikawa	Molecular Genetics	Sep.2010	Protein interaction network evolution
Carl Song	Molecular Genetics	Dec.2009	Pathway analysis
Gavin Wilson	Molecular Genetics	Sep.2009	Protein interaction network evolution
Brad Arshinoff	Molecular Genetics	Jan.2009	Analyzing yeast high content screening data
Devon Radford	Molecular Genetics	Nov.2008	Predicting genetic interactions in yeast from mutations in cell structure
Ron Ammar	Molecular Genetics	Oct.2008	Predicting active biomolecules in yeast
Adrian Verster	Molecular Genetics	Sept.2008	Predicting trigenic synthetic lethalic in yeast
Harshika Seepany	Medical Genetics	Oct.2007	PDZ protein interaction specificity analysis
Shirley Hui	Medical Genetics	Mar.2007	Gene expression correlation analysis
Vuk Pavlovic	Medical Genetics	Feb.2007	Protein complex detection
Trevis Alleyne	Medical Genetics	Nov.2006	Protein interactions involving SH3 domains - specificity prediction
Graham Cromar	Medical Genetics	Oct.2006	Protein interactions involving SH3 domains - interaction prediction
Chris Tan	Medical Genetics	Sep.2006	Protein interactions involving SH3 domains - specificity analysis

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-||<style="text-align: center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Assistant Professor ||Apr.2006 || ||
+||<style="text-align: center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Associate Professor ||Apr.2006 || ||
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-||<style="text-align: center;"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007 ||Chemical genomics in yeast ||
||<style="text-align: center;"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009 ||Multiple perturbations in yeast ||
||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map ||
+||<style="text-align: center;"> {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] || ||Jan.2011 ||Cancer genomics ||
||<style="text-align: center;"> {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || ||Aug.2011 ||Cancer genomics ||
||<style="text-align: center;"> {{attachment:Florence.jpg}} ||Florence Cavalli ||with Michael Taylor ||Dec.2011 ||Cancer genomics ||
||<style="text-align: center;"> {{attachment:Andrea.jpg}} ||Andrea Uetrecht ||with Jason Moffat ||Feb.2012 ||Protein interactions ||
||<style="text-align: center;"> {{attachment:Deena.jpg|alt text|width=150}} ||Deena Gendoo ||with Annie Huang ||Sept. 2012 ||Cancer genomics on Pediatric Brain Tumours ||
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-||<style="text-align: center;"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006 ||Genetic interactions in yeast ||
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-||<style="text-align: center;"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007 ||Protein complex detection from networks ||
||<style="text-align: center;"> {{attachment:chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007 ||Network evolution ||
||<style="text-align: center;"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008 ||Quantitative interaction prediction ||
||<style="text-align: center;"> {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]]||Computer Science||Sept.2009||TBD||
||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center;"> ||
+||<style="text-align: center;"> {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]] ||Computer Science ||Sept.2010 ||Network alignment ||
||<style="text-align: center;"> {{attachment:davids_tn.jpg}} ||[[DavidShih|David Shih]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Jan.2011 ||Cancer genomics of medulloblastoma ||
||<style="text-align: center;"> {{attachment:olhovsky.jpg}} ||[[http://baderlab.org/MarinaOlhovsky|Marina Olhovsky]] ||Part-time M. Sc. student (co-supervised with [[http://www.yorku.ca/ronp/|Ron Pearlman]]); software engineer at [[http://pawsonlab.mshri.on.ca|Tony Pawson]]'s lab ||Jan. 2012 ||Computational predictions of protein-protein interactions ||
||<style="text-align: center;"> {{attachment:omarwagih.jpg}} ||[[OmarWagih|Omar Wagih]] ||Computer Science ||Sept.2012 ||Cancer genomics ||
||<style="text-align: center;"> {{attachment:Pegah.png||height="200px",width="239px"}} ||[[PegahKhosravi|Pegah Khosravi]] ||Bioinformatics ||Oct.2012 ||- ||
||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center;"> ||
||<style="text-align: center;">  ||<style="text-align: center;">Soumil Narayan ||McMaster University ||May 2013 ||- ||
||<style="text-align: center;">  {{attachment:Alvin.png|xx.jpg|height="116",width="116"}} ||<style="text-align: center;">Alvin Leung ||McGill University ||May 2013 ||Cytoscape ||
||<style="text-align: center;"> {{attachment:yue.jpg}} ||<style="text-align: center;">Yue Dong ||University of Toronto ||Dec.2011 ||Cytoscape ||
||<style="text-align: center;"> {{attachment:hussam.jpg|xx.jpg|height="116",width="116"}} ||<style="text-align: center;">Hussam Kaka ||University of Toronto ||Sept 2012 ||GeneMANIA ||
||<style="text-align: center;">{{attachment:victor.jpg}} ||<style="text-align: center;"> [[kofiav|Victor Kofia]] ||University of Toronto ||May 2013 ||Co-Authorship Cytoscape App ||
||<class="table-header">Research Staff ||||||||<class="table-header" style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:Veronique.png}} ||[[VeroniqueVoisin|Veronique Voisin]] ||Research Associate ||Jan.2011 ||Pathway Analysis of Cancer Stem Cells ||
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-||<style="text-align: center;"> {{attachment:khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align: center;">[[http://beta.genemania.org/|GeneMANIA]] ||
+||<class="table-header">Software Developers ||||||||<class="table-header" style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:Khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] ||
||<style="text-align: center;"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] ||
||<style="text-align: center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] ||
||<style="text-align: center;"> {{attachment:qrcode.png}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] ||
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-||<class="table-header">Sys Admin/Build Process ||||||||<class="table-header" style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]] & [[http://baderlab.org/Genemania/BuildProcess|Build Process]] ||Feb.2009 ||[[http://beta.genemania.org/|GeneMANIA]] ||
+||<style="text-align: center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||Feb.2009 ||||<style="text-align: center;">[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]]<<BR>> [[http://baderlab.org/Genemania/BuildProcess|Build Process]] <<BR>> [[http://www.genemania.org/|GeneMANIA]] ||
||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:Jun.jpg}} ||Jun Gu ||Technician (co-supervised with [[http://www.thedonnellycentre.utoronto.ca/members/sachdev_sidhu.html|Dev Sidhu]]) ||Dec.2010 ||Protein interaction screening ||
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+||<style="text-align: center;"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007-Mar.2012 ||Chemical genomics in yeast ||
||<style="text-align: center;"> {{attachment:xiaofeng.jpeg}} ||Xiaofeng Xin || ||Jul.2010-Nov.2011 ||Protein-protein interactions in C. elegans ||
||<style="text-align: center;"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009-Nov.2011 ||Multiple perturbations in yeast ||
||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) ||Active cell map ||
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+||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align: center;"> ||
||<style="text-align: center;"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006-Oct.2012 ||Genetic interactions in yeast ||
||<style="text-align: center;"> {{attachment:MohammedAlshalalfa.jpg}} ||[[Mohammed Alshalalfa]] ||Visiting student from University of Calgary ||May.2011-Dec 2011 ||Master regulators identification using network biology ||
||<style="text-align: center;"> {{attachment:sambourg.png}} ||[[LaureSambourg|Laure Sambourg]] ||[[http://www-timc.imag.fr/?lang=en|Laboratoire TIMC-IMAG]], France, Visiting student ||June.2011-Dec.2011 ||Cancer interactome and alternative splicing ||
||<style="text-align: center;"> {{attachment:Chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007-Aug.2011 ||Network evolution ||
||<style="text-align: center;"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008-Sept.2010 ||Quantitative interaction prediction ||
||<style="text-align: center;"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007-2011 ||Protein complex detection from networks ||
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+||<style="text-align: center;"> {{attachment:xx.jpg}} ||[[XiangXing|Xiang Xing]] ||University of Toronto ||May 2010-Aug 2012 ||WW domain prediction, PDZ domain prediction ||
||<style="text-align: center;"> {{attachment:adrian.jpg}} ||Adrian Zhu || ||Jan. 2011 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] ||
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+||||<style="text-align: center;">Yue Dong ||University of Toronto ||May-Aug 2012 ||App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012) ||
||||<style="text-align: center;">Bimal Ramdoyal ||University of Toronto ||May-Aug 2011 ||Proteomics analysis (4th year project course) ||
||||<style="text-align: center;">Marek Zaluski ||Concordia University, Montreal ||May-Aug 2011 ||HTML5 prototype for Cytoscape Web (Google Summer of Code 2011) ||
||||<style="text-align: center;">Yue Dong ||University of Toronto ||May-Aug 2011 ||3D Renderer for Cytoscape (Google Summer of Code 2011) ||
||||<style="text-align: center;">Layla Oesper ||University of Wisconsin, Madison, WI ||May-Aug 2010 ||WordCloud Plugin for Cytoscape (Google Summer of Code 2010) ||
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-||||<style="text-align: center;">Maital Ashkenazi ||Hebrew University, Jerusalem ||Summer 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) ||
+||||<style="text-align: center;">Maital Ashkenazi ||Hebrew University, Jerusalem ||May-Aug 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) ||
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-||||<style="text-align: center;">Victoria Mui ||University of Toronto, Computer Science ||Summer 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) ||
+||||<style="text-align: center;">Victoria Mui ||University of Toronto, Computer Science ||May-Aug 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) ||
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+||[[HuyNguyen|Huy Nguyen]] ||Molecular Genetics ||Nov.2012 ||Enrichment maps ||
||Huayun Hou ||Molecular Genetics ||Oct.2012 ||Pathway analysis ||
||Jochen Weile ||Molecular Genetics ||Sep.2011 ||Pathway analysis ||
||Akiko Sekikawa ||Molecular Genetics ||Sep.2010 ||Protein interaction network evolution ||