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| ||<class="table-header">Bader Lab ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Assistant Professor ||Apr.2006 || || ||<class="table-header">Post docs ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007 ||Chemical genomics in yeast || ||<style="text-align: center"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009 ||Multiple perturbations in yeast || ||<style="text-align: center"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009 (formerly visiting student since Nov.2007) ||Active cell map || ||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Ron - Moose - 2.JPG|Ron - Moose - 2.JPG}} ||[[RonAmmar|Ron Ammar]] ||Molecular Genetics (co-supervised by Corey Nislow and Guri Giaever in the [[http://chemogenomics.med.utoronto.ca/|HIPHOP Lab]]) ||Jan.2009 ||Yeast chemical genomics & Drug target identification || ||<style="text-align: center"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006 ||Genetic interactions in yeast || ||<style="text-align: center"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 ||Domain specificity || ||<style="text-align: center"> {{attachment:shobhit.png}} ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Sep.2008 ||Domain interaction prediction || ||<style="text-align: center"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007 ||Protein complex detection from networks || ||<style="text-align: center"> {{attachment:chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007 ||Network evolution || ||<style="text-align: center"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008 ||Quantitative interaction prediction || ||<style="text-align: center"> {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]] ||Computer Science ||Sept.2009 ||TBD || ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center">Active cell map <<BR>>(Co-supervised with Andrew Emili) || ||<style="text-align: center"> {{attachment:khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align: center">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align: center">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align: center">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Max.jpg}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align: center">[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center">[[http://www.pathwaycommons.org|Pathway Commons]]<<BR>>[[http://www.biopax.org|BioPAX]] [[http://www.cytoscape.org|Cytoscape]] || ||<class="table-header">Sys Admin/Build Process ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]] & [[http://baderlab.org/Genemania/BuildProcess|Build Process]] ||Feb.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || |
||<class="table-header">Bader Lab ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:gary.png}} ||[[GaryBader|Gary Bader]] ||Associate Professor ||Apr.2006 || || ||<class="table-header">Post docs ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Juri_Reimand_th.jpg}} ||[[JuriReimand|Jüri Reimand]] || ||Jan.2011 ||Cancer genomics || ||<style="text-align: center;"> {{attachment:scott.jpg}} ||[[ScottZuyderduyn|Scott Zuyderduyn]] || ||Aug.2011 ||Cancer genomics || ||<style="text-align: center;"> {{attachment:Florence.jpg}} ||Florence Cavalli ||with Michael Taylor ||Dec.2011 ||Cancer genomics || ||<style="text-align: center;"> {{attachment:Andrea.jpg}} ||Andrea Uetrecht ||with Jason Moffat ||Feb.2012 ||Protein interactions || ||<style="text-align: center;"> {{attachment:Deena.jpg|alt text|width=150}} ||Deena Gendoo ||with Annie Huang ||Sept. 2012 ||Cancer genomics on Pediatric Brain Tumours || ||<style="text-align: center;"> {{attachment:RonAmmar/ron_profile.jpg|Ron|width=250}} ||[[RonAmmar|Ron Ammar]] || ||Aug. 2013 ||MedSavant and The Sick Kids Genome Clinic || ||<style="text-align: center;"> {{attachment:mhelmy3.png|mhelmy3.png}} ||[[MohamedHelmy|Mohamed Helmy]] || ||Sep. 2013 || || ||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Shirley.jpg}} ||[[ShirleyHui|Shirley Hui]] ||Molecular Genetics ||May.2007 ||Domain specificity || ||<style="text-align: center;"> {{attachment:shobhit.png}} ||[[ShobhitJain|Shobhit Jain]] ||Computer Science ||Sep.2008 ||Domain interaction prediction || ||<style="text-align: center;"> {{attachment:Brian.jpg}} ||[[BrianLaw|Brian Law]] ||Computer Science ||Sept.2010 ||Network alignment || ||<style="text-align: center;"> {{attachment:davids_tn.jpg}} ||[[DavidShih|David Shih]] ||Laboratory Medicine and Pathobiology (co-supervised with [[http://www.sickkids.ca/AboutSickKids/Directory/People/T/Michael-D-Taylor.html|Michael D. Taylor]]) ||Jan.2011 ||Cancer genomics of medulloblastoma || ||<style="text-align: center;"> {{attachment:olhovsky.jpg}} ||[[http://baderlab.org/MarinaOlhovsky|Marina Olhovsky]] ||Part-time M. Sc. student (co-supervised with [[http://www.yorku.ca/ronp/|Ron Pearlman]]); software engineer at [[http://pawsonlab.mshri.on.ca|Tony Pawson]]'s lab ||Jan. 2012 ||Computational predictions of protein-protein interactions || ||<style="text-align: center;"> {{attachment:omarwagih.jpg}} ||[[OmarWagih|Omar Wagih]] ||Computer Science ||Sept.2012 ||Cancer genomics || ||<style="text-align: center;"> {{attachment:Pegah.png||height="200px",width="239px"}} ||[[PegahKhosravi|Pegah Khosravi]] ||Bioinformatics ||Oct.2012 ||- || ||<style="text-align: center;"> {{attachment:asha.JPG}} ||[[AshaRostamianfar|Asha Rostamianfar]] ||Computer Science ||Sept.2013 ||- || ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> ||<style="text-align: center;">Diana Nicholls ||University of Toronto ||June-Aug 2013 || Pathguide.org || ||<style="text-align: center;"> ||<style="text-align: center;">Soumil Narayan ||McMaster University ||May-Aug 2013 || Cancer genomics analysis || ||<style="text-align: center;"> {{attachment:Alvin.png|xx.jpg|height="116",width="116"}} ||<style="text-align: center;">Alvin Leung ||Mcgill University ||May-Sep 2013 ||Cytoscape || ||<style="text-align: center;"> {{attachment:yue.jpg}} ||<style="text-align: center;">Yue Dong ||University of Toronto ||Dec.2011 - Sep.2013 ||Cytoscape || ||<style="text-align: center;"> {{attachment:hussam.jpg|xx.jpg|height="116",width="116"}} ||<style="text-align: center;">Hussam Kaka ||University of Toronto ||Sep. 2012 - Aug.2013 ||GeneMANIA || ||<style="text-align: center;">{{attachment:victor.jpg}} ||<style="text-align: center;"> [[kofiav|Victor Kofia]] ||University of Toronto ||May-Aug 2013 ||Co-Authorship Cytoscape App || ||<style="text-align: center;">{{attachment:luke.jpg}} ||<style="text-align: center;"> Luke Chang || Summer Researcher ||June-Aug 2013 || GeneMANIA || ||<class="table-header">High School Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;">{{attachment:arkady.jpg}} ||<style="text-align: center;"> Arkady Arkhangorodsky || Summer Researcher ||July-Aug 2013 || High dimensional data visualization || ||<class="table-header">Research Staff ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Veronique.png}} ||[[VeroniqueVoisin|Veronique Voisin]] ||Research Associate ||Jan.2011 ||Pathway Analysis of Cancer Stem Cells || ||<style="text-align: center;"> {{attachment:ruth.png}} ||[[RuthIsserlin|Ruth Isserlin]] ||Nov.2007 ||||<style="text-align: center;">Active cell map <<BR>>(Co-supervised with Andrew Emili) || ||<class="table-header">Software Developers ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Khalid.jpg}} ||[[KhalidZhumber|Khalid Zhuberi]] ||Jun.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Christian.jpg}} ||[[ChristianLopes|Christian Lopes]] ||Sep.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align: center;"> {{attachment:Jason.jpg}} ||[[JasonMontojo|Jason Montojo]] ||Sep.2008 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] [[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align: center;"> {{attachment:qrcode.png}} ||[[MaxFranz|Max Franz]] ||May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:IgorRodchenkov.jpg}} ||[[IgorRodchenkov|Igor Rodchenkov]] ||Nov.2008 ||||<style="text-align: center;">[[http://www.pathwaycommons.org|Pathway Commons]]<<BR>>[[http://www.biopax.org|BioPAX]] [[http://www.cytoscape.org|Cytoscape]] || ||<style="text-align: center;"> {{attachment:Harold.jpg}} ||[[HaroldRodriguez|Harold Rodriguez]] ||Feb.2009 ||||<style="text-align: center;">[[http://baderlab.org/Intranet/SysAdmin|Systems Administrator]]<<BR>> [[http://baderlab.org/Genemania/BuildProcess|Build Process]] <<BR>> [[http://www.genemania.org/|GeneMANIA]] || ||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Jun.jpg}} ||Jun Gu ||Technician (co-supervised with [[http://www.thedonnellycentre.utoronto.ca/members/sachdev_sidhu.html|Dev Sidhu]]) ||Dec.2010 ||Protein interaction screening || |
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| ||<class="table-header">Post Docs ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008-Apr.2010 ||Cancer Stem Cells / Active cell map || ||<style="text-align: center"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008-Feb.2010 ||Specificity and robustness in protein interaction networks || ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] || ||May.2008-Jun.2010 ||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] || ||Aug.2008-Apr.2010 ||<style="text-align: center">[[http://www.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<style="text-align: center"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] || ||Sep.2007-Dec.2009 ||<style="text-align: center">Integrative Biology of Yeast || ||<style="text-align: center"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] || ||Jan.2007-Oct.2008 ||<style="text-align: center">Protein interaction prediction || ||<style="text-align: center"> {{attachment:matan.png}} ||Michael Matan || ||Jan-Aug.2007 ||<style="text-align: center">Integrative Biology of Yeast || ||<class="table-header">Project Manager ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]] || ||<class="table-header">Quality Assurance ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:lianet.jpg}} ||Lianet Lopez ||Technician (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||Oct.2007-Jun.2008 ||Protein interaction screening || ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center"> || ||<style="text-align: center"> {{attachment:xx.jpg}}||[[XiangXing|Xiang Xing]] ||University of Toronto ||May 2010 ||WW domain prediction, PDZ domain prediction|| ||<style="text-align: center"> {{attachment:Ameen.png}} ||[[AmeenModhafar|Ameen Modhafar]] ||University of Waterloo Systems Design Engineering co-op student ||Jan to Apr.2010 ||Yeast systems analysis || ||<style="text-align: center"> {{attachment:Anson.jpg}} ||[[AnsonMaitland|Anson Maitland]] ||University of Waterloo Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Quentin.jpg}} ||[[QuentinShao|Quentin Shao]] ||McMaster University Applied Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:Pauline.jpg}} ||[[PaulineChao|Pauline Chao]] ||University of Waterloo ||Jan-May.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center"> {{attachment:ben.jpg}} ||[[BenElliott|Benjamin Elliott]] ||University of Toronto Electrical Engineering ||May-August.2008 ||Yeast systems analysis || ||<style="text-align: center"> {{attachment:ioana.jpg}} ||[[IoanaIvan|Ioana Ivan]] ||University of Toronto Computational Biology 299Y student (co-supervised with [[http://biochemistry.utoronto.ca/reithmeier/bch.html|Reinhart Reithmeier]]) ||Sep.2006-Aug.2007 ||Membrane interactions with PDZ domains || ||<style="text-align: center"> {{attachment:kevin.jpg}} ||[[KevinHa|Kevin Ha]] ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Sep-Dec.2006,<<BR>>Apr-Aug.2007 ||Colorectal Cancer biomarkers || ||<style="text-align: center"> {{attachment:stacy.png}} ||[[StacyHung|Stacy Hung]] ||Bioinformatics, UWaterloo ||Apr-Aug.2007 ||Protein interaction prediction || ||<style="text-align: center"> {{attachment:natalie.png}} ||Natalie Yeung ||University of Toronto Immunology, 4th year ||Jan-July.2007 ||Cytoscape usability || ||<style="text-align: center"> {{attachment:aseel2.png}} ||Aseel Al Dallal ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Jan-Apr.2007 ||Colorectal Cancer biomarkers || ||<style="text-align: center"> {{attachment:faisal.gif}} ||Faisal Naqib ||University of Waterloo Faculty of Math(co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||May-Aug.2006 ||Colorectal Cancer biomarkers || ||<class="table-header">Project Students ||||||||<class="table-header" style="text-align: center"> || ||||<style="text-align: center">Monica Raj ||University of British Columbia ||July.2007-April.2008 ||Predicting in vivo PDZ domain protein interactions (4th year research project) || ||||<style="text-align: center">Maital Ashkenazi ||Hebrew University, Jerusalem ||Summer 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) || ||||<style="text-align: center">Anna Rukosuyeva ||University of Toronto, Computer Science ||Sep.2007-Dec.2008 ||Viewing compound nodes in Cytoscape (4th year project course) || ||||<style="text-align: center">Victoria Mui ||University of Toronto, Computer Science ||Summer 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) || |
||<class="table-header">Post Docs ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:iain.png}} ||[[IainWallace|Iain Wallace]] ||Co-supervised with [[http://chemogenomics.med.utoronto.ca/|Guri Giaever and Corey Nislow]] ||Oct.2007-Mar.2012 ||Chemical genomics in yeast || ||<style="text-align: center;"> {{attachment:xiaofeng.jpeg}} ||Xiaofeng Xin || ||Jul.2010-Nov.2011 ||Protein-protein interactions in C. elegans || ||<style="text-align: center;"> {{attachment:magali.png}} ||[[MagaliMichaut|Magali Michaut]] || ||Jan.2009-Nov.2011 ||Multiple perturbations in yeast || ||<style="text-align: center;"> {{attachment:DanieleM.jpg}} ||[[DanieleMerico|Daniele Merico]] ||Co-supervised with [[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) ||Active cell map || ||<style="text-align: center;"> {{attachment:oliver.jpg}} ||[[OliverStueker|Oliver Stueker]] || ||Dec.2008-Apr.2010 ||Cancer Stem Cells / Active cell map || ||<style="text-align: center;"> {{attachment:david.jpg}} ||[[DavidGfeller|David Gfeller]] || ||Feb.2008-Feb.2010 ||Specificity and robustness in protein interaction networks || ||<class="table-header">Graduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:anastasija.jpg}} ||[[AnastasijaBaryshnikova|Anastasija Baryshnikova]] ||Molecular Genetics (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||May.2006-Oct.2012 ||Genetic interactions in yeast || ||<style="text-align: center;"> {{attachment:MohammedAlshalalfa.jpg}} ||[[Mohammed Alshalalfa]] ||Visiting student from University of Calgary ||May.2011-Dec 2011 ||Master regulators identification using network biology || ||<style="text-align: center;"> {{attachment:sambourg.png}} ||[[LaureSambourg|Laure Sambourg]] ||[[http://www-timc.imag.fr/?lang=en|Laboratoire TIMC-IMAG]], France, Visiting student ||June.2011-Dec.2011 ||Cancer interactome and alternative splicing || ||<style="text-align: center;"> {{attachment:Chris.jpg}} ||[[ChrisTan|Chris Tan]] ||Molecular Genetics (co-supervised with [[http://pawsonlab.mshri.on.ca/|Tony Pawson]]) ||Jan.2007-Aug.2011 ||Network evolution || ||<style="text-align: center;"> {{attachment:xiaojian.png}} ||[[XiaojianShao|Xiaojian Shao]] ||[[http://www.cau.edu.cn/|China Agricultural University]], China, Visiting student ||Sept.2008-Sept.2010 ||Quantitative interaction prediction || ||<style="text-align: center;"> {{attachment:vuk.png}} ||[[VukPavlovic|Vuk Pavlovic]] ||Molecular Genetics ||May.2007-2011 ||Protein complex detection from networks || ||<class="table-header">Software Engineers ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Ovi.jpg}} ||[[OviComes|Ovi Comes]] || ||May.2008-Jun.2010 ||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Rashad.jpg}} ||[[RashadBadrawi|Rashad Badrawi]] || ||Aug.2008-Apr.2010 ||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<style="text-align: center;"> {{attachment:Laetitia.jpg}} ||[[LaetitiaMorrison|Laetitia Morrison]] || ||Sep.2007-Dec.2009 ||<style="text-align: center;">Integrative Biology of Yeast || ||<style="text-align: center;"> {{attachment:moyez.png}} ||[[MoyezDharsee|Moyez Dharsee]] || ||Jan.2007-Oct.2008 ||<style="text-align: center;">Protein interaction prediction || ||<style="text-align: center;"> {{attachment:matan.png}} ||Michael Matan || ||Jan-Aug.2007 ||<style="text-align: center;">Integrative Biology of Yeast || ||<class="table-header">Project Manager ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Sylva.jpg}} ||[[SylvaDonaldson|Sylva Donaldson]] ||Project Manager, Coordinator of Training and Outreach ||Jun.2008-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]] || ||<class="table-header">Quality Assurance ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:Farzana.jpg}} ||[[FarzanaKazi|Farzana Kazi]] ||QA Analyst ||Jan.2009-Jun.2010 ||[[http://www.genemania.org|GeneMANIA]]/[[http://www.cytoscape.org|Cytoscape]]/[[http://www.pathwaycommons.org/pc/|Pathway Commons]] || ||<class="table-header">Lab Technicians ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:lianet.jpg}} ||Lianet Lopez ||Technician (co-supervised with [[http://www.utoronto.ca/boonelab/|Charlie Boone]]) ||Oct.2007-Jun.2008 ||Protein interaction screening || ||<class="table-header">Undergraduate Students ||||||||<class="table-header" style="text-align: center;"> || ||<style="text-align: center;"> {{attachment:xx.jpg}} ||[[XiangXing|Xiang Xing]] ||University of Toronto ||May 2010-Aug 2012 ||WW domain prediction, PDZ domain prediction || ||<style="text-align: center;"> {{attachment:adrian.jpg}} ||Adrian Zhu || ||Jan. 2011 ||||<style="text-align: center;">[[http://www.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Ameen.png}} ||[[AmeenModhafar|Ameen Modhafar]] ||University of Waterloo Systems Design Engineering co-op student ||Jan to Apr.2010 ||Yeast systems analysis || ||<style="text-align: center;"> {{attachment:Anson.jpg}} ||[[AnsonMaitland|Anson Maitland]] ||University of Waterloo Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Quentin.jpg}} ||[[QuentinShao|Quentin Shao]] ||McMaster University Applied Mathematics co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Michael.jpg}} ||[[MichaelTsui|Michael Tsui]] ||University of Toronto Bioinformatics ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:George.jpg}} ||[[GeorgeWright|George Wright]] ||McMaster University Biology and Pharmacology co-op student ||May to Aug.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:Pauline.jpg}} ||[[PaulineChao|Pauline Chao]] ||University of Waterloo ||Jan-May.2009 ||[[http://beta.genemania.org/|GeneMANIA]] || ||<style="text-align: center;"> {{attachment:ben.jpg}} ||[[BenElliott|Benjamin Elliott]] ||University of Toronto Electrical Engineering ||May-August.2008 ||Yeast systems analysis || ||<style="text-align: center;"> {{attachment:ioana.jpg}} ||[[IoanaIvan|Ioana Ivan]] ||University of Toronto Computational Biology 299Y student (co-supervised with [[http://biochemistry.utoronto.ca/reithmeier/bch.html|Reinhart Reithmeier]]) ||Sep.2006-Aug.2007 ||Membrane interactions with PDZ domains || ||<style="text-align: center;"> {{attachment:kevin.jpg}} ||[[KevinHa|Kevin Ha]] ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Sep-Dec.2006,<<BR>>Apr-Aug.2007 ||Colorectal Cancer biomarkers || ||<style="text-align: center;"> {{attachment:stacy.png}} ||[[StacyHung|Stacy Hung]] ||Bioinformatics, UWaterloo ||Apr-Aug.2007 ||Protein interaction prediction || ||<style="text-align: center;"> {{attachment:natalie.png}} ||Natalie Yeung ||University of Toronto Immunology, 4th year ||Jan-July.2007 ||Cytoscape usability || ||<style="text-align: center;"> {{attachment:aseel2.png}} ||Aseel Al Dallal ||University of Waterloo Co-op Bioinformatics (co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||Jan-Apr.2007 ||Colorectal Cancer biomarkers || ||<style="text-align: center;"> {{attachment:faisal.gif}} ||Faisal Naqib ||University of Waterloo Faculty of Math(co-supervised with [[http://www.mshri.on.ca/colorectalcancer/bio_gallinger.html|Steve Gallinger]]) ||May-Aug.2006 ||Colorectal Cancer biomarkers || ||<class="table-header">Project Students ||||||||<class="table-header" style="text-align: center;"> || ||||<style="text-align: center;">Yue Dong ||University of Toronto ||May-Aug 2012 ||App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012) || ||||<style="text-align: center;">Bimal Ramdoyal ||University of Toronto ||May-Aug 2011 ||Proteomics analysis (4th year project course) || ||||<style="text-align: center;">Marek Zaluski ||Concordia University, Montreal ||May-Aug 2011 ||HTML5 prototype for Cytoscape Web (Google Summer of Code 2011) || ||||<style="text-align: center;">Yue Dong ||University of Toronto ||May-Aug 2011 ||3D Renderer for Cytoscape (Google Summer of Code 2011) || ||||<style="text-align: center;">Layla Oesper ||University of Wisconsin, Madison, WI ||May-Aug 2010 ||WordCloud Plugin for Cytoscape (Google Summer of Code 2010) || ||||<style="text-align: center;">Monica Raj ||University of British Columbia ||July.2007-April.2008 ||Predicting in vivo PDZ domain protein interactions (4th year research project) || ||||<style="text-align: center;">Maital Ashkenazi ||Hebrew University, Jerusalem ||May-Aug 2007 ||Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) || ||||<style="text-align: center;">Anna Rukosuyeva ||University of Toronto, Computer Science ||Sep.2007-Dec.2008 ||Viewing compound nodes in Cytoscape (4th year project course) || ||||<style="text-align: center;">Victoria Mui ||University of Toronto, Computer Science ||May-Aug 2008 ||Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) || |
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| ||<class="table-header">Graduate Rotation Students ||||||<class="table-header" style="text-align: center"> || | ||<class="table-header">Graduate Rotation Students ||||||<class="table-header" style="text-align: center;"> || ||[[HuyNguyen|Huy Nguyen]] ||Molecular Genetics ||Nov.2012 ||Enrichment maps || ||Huayun Hou ||Molecular Genetics ||Oct.2012 ||Pathway analysis || ||Jochen Weile ||Molecular Genetics ||Sep.2011 ||Pathway analysis || ||Akiko Sekikawa ||Molecular Genetics ||Sep.2010 ||Protein interaction network evolution || |
Current Members
Bader Lab |
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Associate Professor |
Apr.2006 |
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Post docs |
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Jan.2011 |
Cancer genomics |
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Aug.2011 |
Cancer genomics |
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Florence Cavalli |
with Michael Taylor |
Dec.2011 |
Cancer genomics |
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Andrea Uetrecht |
with Jason Moffat |
Feb.2012 |
Protein interactions |
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Deena Gendoo |
with Annie Huang |
Sept. 2012 |
Cancer genomics on Pediatric Brain Tumours |
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Aug. 2013 |
MedSavant and The Sick Kids Genome Clinic |
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Sep. 2013 |
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Graduate Students |
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Molecular Genetics |
May.2007 |
Domain specificity |
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Computer Science |
Sep.2008 |
Domain interaction prediction |
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Computer Science |
Sept.2010 |
Network alignment |
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Laboratory Medicine and Pathobiology (co-supervised with Michael D. Taylor) |
Jan.2011 |
Cancer genomics of medulloblastoma |
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Part-time M. Sc. student (co-supervised with Ron Pearlman); software engineer at Tony Pawson's lab |
Jan. 2012 |
Computational predictions of protein-protein interactions |
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Computer Science |
Sept.2012 |
Cancer genomics |
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Bioinformatics |
Oct.2012 |
- |
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Computer Science |
Sept.2013 |
- |
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Undergraduate Students |
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Diana Nicholls |
University of Toronto |
June-Aug 2013 |
Pathguide.org |
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Soumil Narayan |
McMaster University |
May-Aug 2013 |
Cancer genomics analysis |
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Alvin Leung |
Mcgill University |
May-Sep 2013 |
Cytoscape |
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Yue Dong |
University of Toronto |
Dec.2011 - Sep.2013 |
Cytoscape |
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Hussam Kaka |
University of Toronto |
Sep. 2012 - Aug.2013 |
GeneMANIA |
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University of Toronto |
May-Aug 2013 |
Co-Authorship Cytoscape App |
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Luke Chang |
Summer Researcher |
June-Aug 2013 |
GeneMANIA |
High School Students |
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Arkady Arkhangorodsky |
Summer Researcher |
July-Aug 2013 |
High dimensional data visualization |
Research Staff |
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Research Associate |
Jan.2011 |
Pathway Analysis of Cancer Stem Cells |
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Nov.2007 |
Active cell map |
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Software Developers |
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Jun.2008 |
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Sep.2008 |
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Sep.2008 |
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May 2010 (formerly U of Waterloo co-op student Jan-May 2009 and Sept-Dec 2009) |
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Nov.2008 |
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Feb.2009 |
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Lab Technicians |
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Jun Gu |
Technician (co-supervised with Dev Sidhu) |
Dec.2010 |
Protein interaction screening |
Past Members
Post Docs |
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Co-supervised with Guri Giaever and Corey Nislow |
Oct.2007-Mar.2012 |
Chemical genomics in yeast |
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Xiaofeng Xin |
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Jul.2010-Nov.2011 |
Protein-protein interactions in C. elegans |
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Jan.2009-Nov.2011 |
Multiple perturbations in yeast |
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Co-supervised with Andrew Emili |
Jan.2009-Apr.2011 (formerly visiting student since Nov.2007) |
Active cell map |
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Dec.2008-Apr.2010 |
Cancer Stem Cells / Active cell map |
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Feb.2008-Feb.2010 |
Specificity and robustness in protein interaction networks |
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Graduate Students |
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Molecular Genetics (co-supervised with Charlie Boone) |
May.2006-Oct.2012 |
Genetic interactions in yeast |
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Visiting student from University of Calgary |
May.2011-Dec 2011 |
Master regulators identification using network biology |
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Laboratoire TIMC-IMAG, France, Visiting student |
June.2011-Dec.2011 |
Cancer interactome and alternative splicing |
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Molecular Genetics (co-supervised with Tony Pawson) |
Jan.2007-Aug.2011 |
Network evolution |
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China Agricultural University, China, Visiting student |
Sept.2008-Sept.2010 |
Quantitative interaction prediction |
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Molecular Genetics |
May.2007-2011 |
Protein complex detection from networks |
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Software Engineers |
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May.2008-Jun.2010 |
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Aug.2008-Apr.2010 |
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Sep.2007-Dec.2009 |
Integrative Biology of Yeast |
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Jan.2007-Oct.2008 |
Protein interaction prediction |
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Michael Matan |
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Jan-Aug.2007 |
Integrative Biology of Yeast |
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Project Manager |
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Project Manager, Coordinator of Training and Outreach |
Jun.2008-Jun.2010 |
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Quality Assurance |
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QA Analyst |
Jan.2009-Jun.2010 |
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Lab Technicians |
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Lianet Lopez |
Technician (co-supervised with Charlie Boone) |
Oct.2007-Jun.2008 |
Protein interaction screening |
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Undergraduate Students |
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University of Toronto |
May 2010-Aug 2012 |
WW domain prediction, PDZ domain prediction |
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Adrian Zhu |
|
Jan. 2011 |
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University of Waterloo Systems Design Engineering co-op student |
Jan to Apr.2010 |
Yeast systems analysis |
||
|
University of Waterloo Mathematics co-op student |
May to Aug.2009 |
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|
McMaster University Applied Mathematics co-op student |
May to Aug.2009 |
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|
University of Toronto Bioinformatics |
May to Aug.2009 |
|||
|
McMaster University Biology and Pharmacology co-op student |
May to Aug.2009 |
|||
|
University of Waterloo |
Jan-May.2009 |
|||
|
University of Toronto Electrical Engineering |
May-August.2008 |
Yeast systems analysis |
||
|
University of Toronto Computational Biology 299Y student (co-supervised with Reinhart Reithmeier) |
Sep.2006-Aug.2007 |
Membrane interactions with PDZ domains |
||
|
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Sep-Dec.2006, |
Colorectal Cancer biomarkers |
||
|
Bioinformatics, UWaterloo |
Apr-Aug.2007 |
Protein interaction prediction |
||
|
Natalie Yeung |
University of Toronto Immunology, 4th year |
Jan-July.2007 |
Cytoscape usability |
|
|
Aseel Al Dallal |
University of Waterloo Co-op Bioinformatics (co-supervised with Steve Gallinger) |
Jan-Apr.2007 |
Colorectal Cancer biomarkers |
|
|
Faisal Naqib |
University of Waterloo Faculty of Math(co-supervised with Steve Gallinger) |
May-Aug.2006 |
Colorectal Cancer biomarkers |
|
Project Students |
|
||||
Yue Dong |
University of Toronto |
May-Aug 2012 |
App Manager for Cytoscape, Cytoscape Web 2 renderers (Google Summer of Code 2012) |
||
Bimal Ramdoyal |
University of Toronto |
May-Aug 2011 |
Proteomics analysis (4th year project course) |
||
Marek Zaluski |
Concordia University, Montreal |
May-Aug 2011 |
HTML5 prototype for Cytoscape Web (Google Summer of Code 2011) |
||
Yue Dong |
University of Toronto |
May-Aug 2011 |
3D Renderer for Cytoscape (Google Summer of Code 2011) |
||
Layla Oesper |
University of Wisconsin, Madison, WI |
May-Aug 2010 |
WordCloud Plugin for Cytoscape (Google Summer of Code 2010) |
||
Monica Raj |
University of British Columbia |
July.2007-April.2008 |
Predicting in vivo PDZ domain protein interactions (4th year research project) |
||
Maital Ashkenazi |
Hebrew University, Jerusalem |
May-Aug 2007 |
Enhanced search feature for Cytoscape (Google Summer of Code with David States and Allan Kuchinsky) |
||
Anna Rukosuyeva |
University of Toronto, Computer Science |
Sep.2007-Dec.2008 |
Viewing compound nodes in Cytoscape (4th year project course) |
||
Victoria Mui |
University of Toronto, Computer Science |
May-Aug 2008 |
Label layout algorithm for Cytoscape (Google Summer of Code with Greg Wilson) |
||
Graduate Rotation Students |
|
||
Molecular Genetics |
Nov.2012 |
Enrichment maps |
|
Huayun Hou |
Molecular Genetics |
Oct.2012 |
Pathway analysis |
Jochen Weile |
Molecular Genetics |
Sep.2011 |
Pathway analysis |
Akiko Sekikawa |
Molecular Genetics |
Sep.2010 |
Protein interaction network evolution |
Carl Song |
Molecular Genetics |
Dec.2009 |
Pathway analysis |
Gavin Wilson |
Molecular Genetics |
Sep.2009 |
Protein interaction network evolution |
Brad Arshinoff |
Molecular Genetics |
Jan.2009 |
Analyzing yeast high content screening data |
Devon Radford |
Molecular Genetics |
Nov.2008 |
Predicting genetic interactions in yeast from mutations in cell structure |
Ron Ammar |
Molecular Genetics |
Oct.2008 |
Predicting active biomolecules in yeast |
Adrian Verster |
Molecular Genetics |
Sept.2008 |
Predicting trigenic synthetic lethalic in yeast |
Harshika Seepany |
Medical Genetics |
Oct.2007 |
PDZ protein interaction specificity analysis |
Shirley Hui |
Medical Genetics |
Mar.2007 |
Gene expression correlation analysis |
Vuk Pavlovic |
Medical Genetics |
Feb.2007 |
Protein complex detection |
Trevis Alleyne |
Medical Genetics |
Nov.2006 |
Protein interactions involving SH3 domains - specificity prediction |
Graham Cromar |
Medical Genetics |
Oct.2006 |
Protein interactions involving SH3 domains - interaction prediction |
Chris Tan |
Medical Genetics |
Sep.2006 |
Protein interactions involving SH3 domains - specificity analysis |